Merge pull request #2 from rmarkello/afni_deconvolve

Afni deconvolve

Author: tsalo

nipype/interfaces/afni/model.py

@@ -0,0 +1,49 @@
+# -*- coding: utf-8 -*-
+# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
+# vi: set ft = python sts = 4 ts = 4 sw = 4 et:
+"""AFNI modeling interfaces
+
+Examples
+--------
+See the docstrings of the individual classes for examples.
+  .. testsetup::
+    # Change directory to provide relative paths for doctests
+    >>> filepath = os.path.dirname( os.path.realpath( __file__ ) )
+    >>> datadir = os.path.realpath(os.path.join(filepath, '../../testing/data'))
+    >>> os.chdir(datadir)
+"""
+from __future__ import print_function, division, unicode_literals, absolute_import
+from builtins import str, bytes
+
+import os
+import os.path as op
+import re
+import numpy as np
+
+from ...utils.filemanip import (load_json, save_json, split_filename)
+from ..base import (
+    CommandLineInputSpec, CommandLine, Directory, TraitedSpec,
+    traits, isdefined, File, InputMultiPath, Undefined, Str)
+from ...external.due import BibTeX
+
+from .base import (
+    AFNICommandBase, AFNICommand, AFNICommandInputSpec, AFNICommandOutputSpec)
+
+class DeconvolveInputSpec(AFNICommandInputSpec):
+    pass
+
+class DeconvolveOutputSpec(TraitedSpec):
+    pass
+
+class Deconvolve(AFNICommand):
+    """Performs OLS regression given a 4D neuroimage file and stimulus timings
+
+    For complete details, see the `3dDeconvolve Documentation.
+    <https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dDeconvolve.html>`_
+
+    Examples
+    ========
+
+    >>> from nipype.interfaces import afni
+    >>> deconvolve = afni.Deconvolve()
+    """