From 5eaf56386e653087c9d541414bda23f8711279f6 Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Fri, 8 Jan 2021 16:13:54 -0600
Subject: [PATCH 01/14] CI: use conda incubator in doc and benchmarks

---
 .github/workflows/ci.yml | 98 ++++++++++++++++++++++++----------------
 1 file changed, 59 insertions(+), 39 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index e8834bd509bf0..0d8e3f6639191 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -2,7 +2,7 @@ name: CI
 
 on:
   push:
-    branches: master
+    branches: [master]
   pull_request:
     branches:
       - master
@@ -16,10 +16,6 @@ jobs:
     name: Checks
     runs-on: ubuntu-latest
     steps:
-
-    - name: Setting conda path
-      run: echo "${HOME}/miniconda3/bin" >> $GITHUB_PATH
-
     - name: Checkout
       uses: actions/checkout@v1
 
@@ -27,49 +23,58 @@ jobs:
       run: ci/code_checks.sh patterns
       if: always()
 
-    - name: Setup environment and build pandas
-      run: ci/setup_env.sh
-      if: always()
+    - name: Cache conda
+      uses: actions/cache@v1
+      env:
+        CACHE_NUMBER: 0
+      with:
+        path: ~/conda_pkgs_dir
+        key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
+          hashFiles('${{ env.ENV_FILE }}') }}
 
-    - name: Linting
+    - uses: conda-incubator/setup-miniconda@v2
+      with:
+        activate-environment: pandas-dev
+        channel-priority: strict
+        environment-file: ${{ env.ENV_FILE }}
+        use-only-tar-bz2: true
+
+    - name: Environment Detail
       run: |
-        source activate pandas-dev
-        ci/code_checks.sh lint
+        conda info
+        conda list
+
+    - name: Build Pandas
+      run: |
+        python setup.py build_ext -j 2
+        python -m pip install -e . --no-build-isolation --no-use-pep517
+
+    - name: Linting
+      run: ci/code_checks.sh lint
       if: always()
 
     - name: Checks on imported code
-      run: |
-        source activate pandas-dev
-        ci/code_checks.sh code
+      run: ci/code_checks.sh code
       if: always()
 
     - name: Running doctests
-      run: |
-        source activate pandas-dev
-        ci/code_checks.sh doctests
+      run: ci/code_checks.sh doctests
       if: always()
 
     - name: Docstring validation
-      run: |
-        source activate pandas-dev
-        ci/code_checks.sh docstrings
+      run: ci/code_checks.sh docstrings
       if: always()
 
     - name: Typing validation
-      run: |
-        source activate pandas-dev
-        ci/code_checks.sh typing
+      run: ci/code_checks.sh typing
       if: always()
 
     - name: Testing docstring validation script
-      run: |
-        source activate pandas-dev
-        pytest --capture=no --strict-markers scripts
+      run: pytest --capture=no --strict-markers scripts
       if: always()
 
     - name: Running benchmarks
       run: |
-        source activate pandas-dev
         cd asv_bench
         asv check -E existing
         git remote add upstream https://github.com/pandas-dev/pandas.git
@@ -92,25 +97,40 @@ jobs:
     name: Web and docs
     runs-on: ubuntu-latest
     steps:
-
-    - name: Setting conda path
-      run: echo "${HOME}/miniconda3/bin" >> $GITHUB_PATH
-
     - name: Checkout
       uses: actions/checkout@v1
 
-    - name: Setup environment and build pandas
-      run: ci/setup_env.sh
+    - name: Cache conda
+      uses: actions/cache@v1
+      env:
+        CACHE_NUMBER: 0
+      with:
+        path: ~/conda_pkgs_dir
+        key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
+          hashFiles('${{ env.ENV_FILE }}') }}
 
-    - name: Build website
+    - uses: conda-incubator/setup-miniconda@v2
+      with:
+        activate-environment: pandas-dev
+        channel-priority: strict
+        environment-file: ${{ env.ENV_FILE }}
+        use-only-tar-bz2: true
+
+    - name: Environment Detail
       run: |
-        source activate pandas-dev
-        python web/pandas_web.py web/pandas --target-path=web/build
+        conda info
+        conda list
 
-    - name: Build documentation
+    - name: Build Pandas
       run: |
-        source activate pandas-dev
-        doc/make.py --warnings-are-errors | tee sphinx.log ; exit ${PIPESTATUS[0]}
+        python setup.py build_ext -j 2
+        python -m pip install -e . --no-build-isolation --no-use-pep517
+
+    - name: Build website
+      run: python web/pandas_web.py web/pandas --target-path=web/build
+
+    - name: Build documentation
+      run: doc/make.py --warnings-are-errors | tee sphinx.log ; exit ${PIPESTATUS[0]}
 
     # This can be removed when the ipython directive fails when there are errors,
     # including the `tee sphinx.log` in te previous step (https://github.com/ipython/ipython/issues/11547)

From cb3f9a07e37b086e8a8da7b3ae8f74153d9b5edc Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Fri, 8 Jan 2021 16:29:23 -0600
Subject: [PATCH 02/14] CI: use conda incubator in doc and benchmarks

---
 .github/workflows/ci.yml | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 0d8e3f6639191..5589d464da6e0 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -15,6 +15,10 @@ jobs:
   checks:
     name: Checks
     runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+
     steps:
     - name: Checkout
       uses: actions/checkout@v1
@@ -96,6 +100,10 @@ jobs:
   web_and_docs:
     name: Web and docs
     runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+
     steps:
     - name: Checkout
       uses: actions/checkout@v1

From 6493a5a8eba3fd072ebba2ccb21d1307638bd830 Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Sun, 10 Jan 2021 20:27:48 -0600
Subject: [PATCH 03/14] fix doc usage error

---
 doc/source/user_guide/enhancingperf.rst | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/doc/source/user_guide/enhancingperf.rst b/doc/source/user_guide/enhancingperf.rst
index 42621c032416d..49bb923dbec39 100644
--- a/doc/source/user_guide/enhancingperf.rst
+++ b/doc/source/user_guide/enhancingperf.rst
@@ -247,7 +247,7 @@ We've gotten another big improvement. Let's check again where the time is spent:
 
 .. ipython:: python
 
-   %%prun -l 4 apply_integrate_f(df["a"].to_numpy(), df["b"].to_numpy(), df["N"].to_numpy())
+   %prun -l 4 apply_integrate_f(df["a"].to_numpy(), df["b"].to_numpy(), df["N"].to_numpy())
 
 As one might expect, the majority of the time is now spent in ``apply_integrate_f``,
 so if we wanted to make anymore efficiencies we must continue to concentrate our

From 8a534db45be560c459b2135070e47c93e1357a36 Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Wed, 13 Jan 2021 08:52:59 -0600
Subject: [PATCH 04/14] cache

---
 .github/workflows/ci.yml | 16 +++++-----------
 1 file changed, 5 insertions(+), 11 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 17e320b3b2a0b..fbb0500207d31 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -28,13 +28,10 @@ jobs:
       if: always()
 
     - name: Cache conda
-      uses: actions/cache@v1
-      env:
-        CACHE_NUMBER: 0
+      uses: actions/cache@v2
       with:
         path: ~/conda_pkgs_dir
-        key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
-          hashFiles('${{ env.ENV_FILE }}') }}
+        key: ${{ runner.os }}-conda-${{ hashFiles('${{ env.ENV_FILE }}') }}
 
     - uses: conda-incubator/setup-miniconda@v2
       with:
@@ -109,13 +106,10 @@ jobs:
       uses: actions/checkout@v1
 
     - name: Cache conda
-      uses: actions/cache@v1
-      env:
-        CACHE_NUMBER: 0
+      uses: actions/cache@v2
       with:
         path: ~/conda_pkgs_dir
-        key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
-          hashFiles('${{ env.ENV_FILE }}') }}
+        key: ${{ runner.os }}-conda-${{ hashFiles('${{ env.ENV_FILE }}') }}
 
     - uses: conda-incubator/setup-miniconda@v2
       with:
@@ -138,7 +132,7 @@ jobs:
       run: python web/pandas_web.py web/pandas --target-path=web/build
 
     - name: Build documentation
-      run: doc/make.py --warnings-are-errors | tee sphinx.log ; exit ${PIPESTATUS[0]}
+      run: doc/make.py --warnings-are-errors --num-jobs 2 | tee sphinx.log ; exit ${PIPESTATUS[0]}
 
     # This can be removed when the ipython directive fails when there are errors,
     # including the `tee sphinx.log` in te previous step (https://github.com/ipython/ipython/issues/11547)

From 323daeb28bb6e041ccb1bc31edb19c2881b9dcf1 Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Wed, 13 Jan 2021 09:33:57 -0600
Subject: [PATCH 05/14] debug

---
 .github/workflows/ci.yml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index fbb0500207d31..e3af4964cd478 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -132,7 +132,9 @@ jobs:
       run: python web/pandas_web.py web/pandas --target-path=web/build
 
     - name: Build documentation
-      run: doc/make.py --warnings-are-errors --num-jobs 2 | tee sphinx.log ; exit ${PIPESTATUS[0]}
+      run: |
+        doc/make.py --warnings-are-errors --num-jobs 2 | tee sphinx.log
+        echo ${PIPESTATUS}
 
     # This can be removed when the ipython directive fails when there are errors,
     # including the `tee sphinx.log` in te previous step (https://github.com/ipython/ipython/issues/11547)

From 7e7987367093d7d9d371ff8307828d508c0deb24 Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Wed, 13 Jan 2021 10:16:57 -0600
Subject: [PATCH 06/14] debug

---
 .github/workflows/ci.yml       | 4 +---
 doc/source/whatsnew/v0.8.0.rst | 2 +-
 2 files changed, 2 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index e3af4964cd478..29f791542374e 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -132,9 +132,7 @@ jobs:
       run: python web/pandas_web.py web/pandas --target-path=web/build
 
     - name: Build documentation
-      run: |
-        doc/make.py --warnings-are-errors --num-jobs 2 | tee sphinx.log
-        echo ${PIPESTATUS}
+      run: doc/make.py --warnings-are-errors --num-jobs 2 | tee sphinx.log
 
     # This can be removed when the ipython directive fails when there are errors,
     # including the `tee sphinx.log` in te previous step (https://github.com/ipython/ipython/issues/11547)
diff --git a/doc/source/whatsnew/v0.8.0.rst b/doc/source/whatsnew/v0.8.0.rst
index 781054fc4de7c..dc4dcdc8a7f9a 100644
--- a/doc/source/whatsnew/v0.8.0.rst
+++ b/doc/source/whatsnew/v0.8.0.rst
@@ -165,7 +165,7 @@ New plotting methods
 
 ``Series.plot`` now supports a ``secondary_y`` option:
 
-.. code-block:: python
+.. ipython:: python
 
    plt.figure()
 

From d462f03d7618b15757945c4321774c76d2b399d3 Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Wed, 13 Jan 2021 10:41:41 -0600
Subject: [PATCH 07/14] debug

---
 doc/source/whatsnew/v0.8.0.rst | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/doc/source/whatsnew/v0.8.0.rst b/doc/source/whatsnew/v0.8.0.rst
index dc4dcdc8a7f9a..d9f52b73ca10e 100644
--- a/doc/source/whatsnew/v0.8.0.rst
+++ b/doc/source/whatsnew/v0.8.0.rst
@@ -156,7 +156,7 @@ Other new features
 New plotting methods
 ~~~~~~~~~~~~~~~~~~~~
 
-.. code-block:: python
+.. ipython:: python
 
    import pandas as pd
 

From bcd7943fbf1cec61ba0d353788d6234abf17f960 Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Wed, 13 Jan 2021 16:05:04 -0600
Subject: [PATCH 08/14] revert

---
 doc/source/whatsnew/v0.8.0.rst | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/doc/source/whatsnew/v0.8.0.rst b/doc/source/whatsnew/v0.8.0.rst
index d9f52b73ca10e..781054fc4de7c 100644
--- a/doc/source/whatsnew/v0.8.0.rst
+++ b/doc/source/whatsnew/v0.8.0.rst
@@ -156,7 +156,7 @@ Other new features
 New plotting methods
 ~~~~~~~~~~~~~~~~~~~~
 
-.. ipython:: python
+.. code-block:: python
 
    import pandas as pd
 
@@ -165,7 +165,7 @@ New plotting methods
 
 ``Series.plot`` now supports a ``secondary_y`` option:
 
-.. ipython:: python
+.. code-block:: python
 
    plt.figure()
 

From 24bb7c171e4de6f5660b8b849b1088d3fb8948f7 Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Wed, 13 Jan 2021 19:41:52 -0600
Subject: [PATCH 09/14] revert

---
 .github/workflows/ci.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 29f791542374e..3b53ce859e932 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -10,6 +10,7 @@ on:
 
 env:
   ENV_FILE: environment.yml
+  PANDAS_CI: 1
 
 jobs:
   checks:
@@ -132,7 +133,7 @@ jobs:
       run: python web/pandas_web.py web/pandas --target-path=web/build
 
     - name: Build documentation
-      run: doc/make.py --warnings-are-errors --num-jobs 2 | tee sphinx.log
+      run: doc/make.py --warnings-are-errors --num-jobs 2 | tee sphinx.log ; exit ${PIPESTATUS[0]}
 
     # This can be removed when the ipython directive fails when there are errors,
     # including the `tee sphinx.log` in te previous step (https://github.com/ipython/ipython/issues/11547)

From 089b8baa2eced16a686241f2e85ed9d3273371a5 Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Wed, 13 Jan 2021 22:56:54 -0600
Subject: [PATCH 10/14] change ipython to code-block

---
 doc/source/whatsnew/v0.8.0.rst | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/doc/source/whatsnew/v0.8.0.rst b/doc/source/whatsnew/v0.8.0.rst
index 781054fc4de7c..490175914cef1 100644
--- a/doc/source/whatsnew/v0.8.0.rst
+++ b/doc/source/whatsnew/v0.8.0.rst
@@ -176,7 +176,7 @@ New plotting methods
 Vytautas Jancauskas, the 2012 GSOC participant, has added many new plot
 types. For example, ``'kde'`` is a new option:
 
-.. ipython:: python
+.. code-block:: python
 
    s = pd.Series(
        np.concatenate((np.random.randn(1000), np.random.randn(1000) * 0.5 + 3))

From d788560a4b1a7970bdcf9278d0052d6f5f09ebcf Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Wed, 13 Jan 2021 23:35:08 -0600
Subject: [PATCH 11/14] debug

---
 .github/workflows/ci.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 3b53ce859e932..972139f2d96ae 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -133,7 +133,7 @@ jobs:
       run: python web/pandas_web.py web/pandas --target-path=web/build
 
     - name: Build documentation
-      run: doc/make.py --warnings-are-errors --num-jobs 2 | tee sphinx.log ; exit ${PIPESTATUS[0]}
+      run: doc/make.py --warnings-are-errors --num-jobs 2 | tee sphinx.log
 
     # This can be removed when the ipython directive fails when there are errors,
     # including the `tee sphinx.log` in te previous step (https://github.com/ipython/ipython/issues/11547)

From 776cb83765a4ad83582c6195d224278a04ed1f8d Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Thu, 14 Jan 2021 00:11:41 -0600
Subject: [PATCH 12/14] debug

---
 .github/workflows/ci.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 972139f2d96ae..49cab85ab6daa 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -100,7 +100,7 @@ jobs:
     runs-on: ubuntu-latest
     defaults:
       run:
-        shell: bash -l {0}
+        shell: bash -l -e {0}
 
     steps:
     - name: Checkout
@@ -133,7 +133,7 @@ jobs:
       run: python web/pandas_web.py web/pandas --target-path=web/build
 
     - name: Build documentation
-      run: doc/make.py --warnings-are-errors --num-jobs 2 | tee sphinx.log
+      run: doc/make.py --warnings-are-errors --num-jobs 2 | tee sphinx.log ; exit ${PIPESTATUS[0]}
 
     # This can be removed when the ipython directive fails when there are errors,
     # including the `tee sphinx.log` in te previous step (https://github.com/ipython/ipython/issues/11547)

From 8551328a4958e1dd2e8091cbf61ea7bb501514e8 Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Thu, 14 Jan 2021 00:36:19 -0600
Subject: [PATCH 13/14] debug

---
 .github/workflows/ci.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 49cab85ab6daa..770856d12b217 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -133,7 +133,7 @@ jobs:
       run: python web/pandas_web.py web/pandas --target-path=web/build
 
     - name: Build documentation
-      run: doc/make.py --warnings-are-errors --num-jobs 2 | tee sphinx.log ; exit ${PIPESTATUS[0]}
+      run: doc/make.py --warnings-are-errors | tee sphinx.log ; exit ${PIPESTATUS[0]}
 
     # This can be removed when the ipython directive fails when there are errors,
     # including the `tee sphinx.log` in te previous step (https://github.com/ipython/ipython/issues/11547)

From a60be156d8d3a7acf8b5ece9516ad3b49d71eff4 Mon Sep 17 00:00:00 2001
From: Fangchen Li <fangchen.li@outlook.com>
Date: Thu, 14 Jan 2021 11:18:19 -0600
Subject: [PATCH 14/14] revert doc ci

---
 .github/workflows/ci.yml | 41 ++++++++++++----------------------------
 1 file changed, 12 insertions(+), 29 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 770856d12b217..b551e7ded0178 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -98,42 +98,25 @@ jobs:
   web_and_docs:
     name: Web and docs
     runs-on: ubuntu-latest
-    defaults:
-      run:
-        shell: bash -l -e {0}
-
     steps:
-    - name: Checkout
-      uses: actions/checkout@v1
-
-    - name: Cache conda
-      uses: actions/cache@v2
-      with:
-        path: ~/conda_pkgs_dir
-        key: ${{ runner.os }}-conda-${{ hashFiles('${{ env.ENV_FILE }}') }}
 
-    - uses: conda-incubator/setup-miniconda@v2
-      with:
-        activate-environment: pandas-dev
-        channel-priority: strict
-        environment-file: ${{ env.ENV_FILE }}
-        use-only-tar-bz2: true
+    - name: Setting conda path
+      run: echo "${HOME}/miniconda3/bin" >> $GITHUB_PATH
 
-    - name: Environment Detail
-      run: |
-        conda info
-        conda list
+    - name: Checkout
+      uses: actions/checkout@v1
 
-    - name: Build Pandas
-      run: |
-        python setup.py build_ext -j 2
-        python -m pip install -e . --no-build-isolation --no-use-pep517
+    - name: Setup environment and build pandas
+      run: ci/setup_env.sh
 
     - name: Build website
-      run: python web/pandas_web.py web/pandas --target-path=web/build
-
+      run: |
+        source activate pandas-dev
+        python web/pandas_web.py web/pandas --target-path=web/build
     - name: Build documentation
-      run: doc/make.py --warnings-are-errors | tee sphinx.log ; exit ${PIPESTATUS[0]}
+      run: |
+        source activate pandas-dev
+        doc/make.py --warnings-are-errors | tee sphinx.log ; exit ${PIPESTATUS[0]}
 
     # This can be removed when the ipython directive fails when there are errors,
     # including the `tee sphinx.log` in te previous step (https://github.com/ipython/ipython/issues/11547)