Topic/v1.10/nag configury

autogen.pl

@@ -899,10 +899,15 @@ sub patch_autotools_output {
     # enough Libtool that dosn't need this patch.  But don't alarm the
     # user and make them think that autogen failed if this patch fails --
     # make the errors be silent.
+    # Also patch ltmain.sh for NAG compiler
     if (-f "config/ltmain.sh") {
         verbose "$indent_str"."Patching PGI compiler version numbers in ltmain.sh\n";
         system("$patch_prog -N -p0 < $topdir/config/ltmain_pgi_tp.diff >/dev/null 2>&1");
         unlink("config/ltmain.sh.rej");
+
+        verbose "$indent_str"."Patching \"-pthread\" option for NAG compiler in ltmain.sh\n";
+        system("$patch_prog -N -p0 < $topdir/config/ltmain_nag_pthread.diff >/dev/null 2>&1");
+        unlink("config/ltmain.sh.rej");
     }
 
     # Total ugh.  We have to patch the configure script itself.  See below
@@ -969,6 +974,25 @@ sub patch_autotools_output {
         $c =~ s/$search_string/$replace_string/;
     }
 
+    foreach my $tag (("", "_FC")) {
+
+        # We have to change the search pattern and substitution on each
+        # iteration to take into account the tag changing
+        my $search_string = 'lf95\052.*# Lahey Fortran 8.1\n\s+' .
+            "whole_archive_flag_spec${tag}=" . '\n\s+' .
+            "tmp_sharedflag='--shared' ;;" . '\n\s+' .
+            'xl';
+        my $replace_string = "lf95*)				# Lahey Fortran 8.1
+	  whole_archive_flag_spec${tag}=
+	  tmp_sharedflag='--shared' ;;
+	nagfor*)			# NAGFOR 5.3
+	  tmp_sharedflag='-Wl,-shared';;
+	xl";
+
+        verbose "$indent_str"."Patching configure for NAG compiler ($tag)\n";
+        $c =~ s/$search_string/$replace_string/;
+    }
+
     # Oracle has apparently begun (as of 12.5-beta) removing the "Sun" branding.
     # So this patch (cumulative over the previous one) is required.
     verbose "$indent_str"."Patching configure for Oracle Studio Fortran version strings\n";

config/Makefile.am

@@ -12,6 +12,8 @@
 # Copyright (c) 2006-2015 Cisco Systems, Inc.  All rights reserved.
 # Copyright (c) 2010      Oracle and/or its affiliates.  All rights 
 #                         reserved.
+# Copyright (c) 2016      Research Organization for Information Science
+#                         and Technology (RIST). All rights reserved.
 # $COPYRIGHT$
 # 
 # Additional copyrights may follow
@@ -21,8 +23,9 @@
 
 EXTRA_DIST = \
         distscript.csh \
-	opal_get_version.m4sh \
-	ltmain_pgi_tp.diff \
+        opal_get_version.m4sh \
+        ltmain_nag_pthread.diff \
+        ltmain_pgi_tp.diff \
         ompi_mca_priority_sort.pl
 
 maintainer-clean-local:

config/ltmain_nag_pthread.diff

@@ -0,0 +1,18 @@
+--- config/ltmain.sh
++++ config/ltmain.sh
+@@ -6417,8 +6417,14 @@
+ 	func_source "$lib"
+
+ 	# Convert "-framework foo" to "foo.ltframework"
++        # and "-pthread" to "-Wl,-pthread" if NAG compiler
+ 	if test -n "$inherited_linker_flags"; then
+-	  tmp_inherited_linker_flags=`$ECHO "$inherited_linker_flags" | $SED 's/-framework \([^ $]*\)/\1.ltframework/g'`
++          case "$CC" in
++            nagfor*)
++	      tmp_inherited_linker_flags=`$ECHO "$inherited_linker_flags" | $SED 's/-framework \([^ $]*\)/\1.ltframework/g' | $SED 's/-pthread/-Wl,-pthread'`;;
++            *)
++	      tmp_inherited_linker_flags=`$ECHO "$inherited_linker_flags" | $SED 's/-framework \([^ $]*\)/\1.ltframework/g'`;;
++          esac
+ 	  for tmp_inherited_linker_flag in $tmp_inherited_linker_flags; do
+ 	    case " $new_inherited_linker_flags " in
+ 	      *" $tmp_inherited_linker_flag "*) ;;

config/ompi_setup_fc.m4

@@ -14,6 +14,8 @@ dnl Copyright (c) 2007      Los Alamos National Security, LLC.  All rights
 dnl                         reserved. 
 dnl Copyright (c) 2007      Sun Microsystems, Inc.  All rights reserved.
 dnl Copyright (c) 2009-2014 Cisco Systems, Inc.  All rights reserved.
+dnl Copyright (c) 2016      Research Organization for Information Science
+dnl                         and Technology (RIST). All rights reserved.
 dnl $COPYRIGHT$
 dnl 
 dnl Additional copyrights may follow
@@ -41,7 +43,7 @@ AC_DEFUN_ONCE([_OMPI_SETUP_FC_COMPILER],[
     # Fortran compilers (excluding the f77 compiler names) from AC's
     # default list of compilers and use it here.  This is the main
     # reason we have an OMPI-ized version of the PROG_FC macro.
-    AC_PROG_FC([gfortran f95 fort xlf95 ifort ifc efc pgfortran pgf95 lf95 f90 xlf90 pgf90 epcf90])
+    AC_PROG_FC([gfortran f95 fort xlf95 ifort ifc efc pgfortran pgf95 lf95 f90 xlf90 pgf90 epcf90 nagfor])
     FCFLAGS="$ompi_fcflags_save"
     OPAL_VAR_SCOPE_POP
 ])
@@ -107,7 +109,29 @@ AC_DEFUN([OMPI_SETUP_FC],[
                ;;
            esac])
     AC_SUBST(OMPI_FORTRAN_EXTRA_SHARED_LIBRARY_FLAGS)
-
+
+    # The Absoft compiler does not like the fact that we use lots of
+    # "ignore TKR" comment pragmas that it doesn't understand, and
+    # will warn about them.  From Tony Goetz at Absoft, we can use the
+    # -Z790 flag to quell these warnings.
+    # The NAG compiler is too picky about naming conventions, so use the
+    # -mismatch flag to keep it happy
+    AC_MSG_CHECKING([for $FC warnings flags])
+    fc_version=`$FC --version 2>&1`
+    case "$fc_version" in
+    *Absoft*)
+        AC_MSG_RESULT([-Z790])
+        FCFLAGS="$FCFLAGS -Z790"
+        ;;
+    *NAG*)
+        AC_MSG_RESULT([-mismatch])
+        FCFLAGS="$FCFLAGS -mismatch"
+        ;;
+    *)
+        AC_MSG_RESULT([none])
+        ;;
+    esac
+
     # If we're still good, then save the extra file types.  Do this last
     # because it implies tests that should be invoked by the above tests
     # (e.g., running the fortran compiler).

config/opal_setup_wrappers.m4

@@ -12,7 +12,7 @@ dnl Copyright (c) 2004-2005 The Regents of the University of California.
 dnl                         All rights reserved.
 dnl Copyright (c) 2006-2010 Oracle and/or its affiliates.  All rights reserved.
 dnl Copyright (c) 2009-2015 Cisco Systems, Inc.  All rights reserved.
-dnl Copyright (c) 2015      Research Organization for Information Science
+dnl Copyright (c) 2015-2016 Research Organization for Information Science
 dnl                         and Technology (RIST). All rights reserved.
 dnl $COPYRIGHT$
 dnl 
@@ -172,7 +172,33 @@ EOF
 
     AS_IF([test -n "$rpath_args"],
           [WRAPPER_RPATH_SUPPORT=rpath
-           AC_MSG_RESULT([yes ($rpath_args)])],
+           cat > $rpath_script <<EOF
+#!/bin/sh
+
+# Slurp in the libtool config into my environment
+
+# Apparently, "libtoool --config" calls "exit", so we can't source it
+# (because if script A sources script B, and B calls "exit", then both
+# B and A will exit).  Instead, we have to send the output to a file
+# and then source that.
+$OPAL_TOP_BUILDDIR/libtool --tag=FC --config > $rpath_outfile
+
+chmod +x $rpath_outfile
+. ./$rpath_outfile
+rm -f $rpath_outfile
+
+# Evaluate \$hardcode_libdir_flag_spec, and substitute in LIBDIR for \$libdir
+libdir=LIBDIR
+flags="\`eval echo \$hardcode_libdir_flag_spec\`"
+echo \$flags
+
+# Done
+exit 0
+EOF
+           chmod +x $rpath_script
+           rpath_fc_args=`./$rpath_script`
+           rm -f $rpath_script
+           AC_MSG_RESULT([yes ($rpath_args + $rpath_fc_args)])],
           [WRAPPER_RPATH_SUPPORT=unnecessary
            AC_MSG_RESULT([yes (no extra flags needed)])])
 
@@ -191,7 +217,7 @@ EOF
 # If DT_RUNPATH is supported, then we'll use *both* the RPATH and
 # RUNPATH flags in the LDFLAGS.
 AC_DEFUN([OPAL_SETUP_RUNPATH],[
-    OPAL_VAR_SCOPE_PUSH([LDFLAGS_save])
+    OPAL_VAR_SCOPE_PUSH([LDFLAGS_save rpath_script rpath_outfile wl_fc])
 
     AC_MSG_CHECKING([if linker supports RUNPATH])
     # Set the output in $runpath_args
@@ -205,6 +231,44 @@ AC_DEFUN([OPAL_SETUP_RUNPATH],[
                     AC_MSG_RESULT([yes (-Wl,--enable-new-dtags)])],
                    [AC_MSG_RESULT([no])])
     AC_LANG_POP([C])
+    # Output goes into globally-visible $rpath_args.  Run this in a
+    # sub-process so that we don't pollute the current process
+    # environment.
+    rpath_script=conftest.$$.sh
+    rpath_outfile=conftest.$$.out
+    rm -f $rpath_script $rpath_outfile
+    cat > $rpath_script <<EOF
+#!/bin/sh
+
+# Slurp in the libtool config into my environment
+
+# Apparently, "libtoool --config" calls "exit", so we can't source it
+# (because if script A sources script B, and B calls "exit", then both
+# B and A will exit).  Instead, we have to send the output to a file
+# and then source that.
+$OPAL_TOP_BUILDDIR/libtool --tag=FC--config > $rpath_outfile
+
+chmod +x $rpath_outfile
+. ./$rpath_outfile
+rm -f $rpath_outfile
+
+wl="\`eval echo \$wl\`"
+echo \$wl
+
+# Done
+exit 0
+EOF
+    chmod +x $rpath_script
+    wl_fc=`./$rpath_script`
+    rm -f $rpath_script
+
+    LDFLAGS="$LDFLAGS_save ${wl_fc}--enable-new-dtags"
+    AC_LANG_PUSH([Fortran])
+    AC_LINK_IFELSE([AC_LANG_SOURCE([[program test
+end program]])],
+                   [runpath_fc_args="${wl_fc}--enable-new-dtags"],
+                   [runpath_fc_args=""])
+    AC_LANG_POP([Fortran])
     LDFLAGS=$LDFLAGS_save
 
     OPAL_VAR_SCOPE_POP
@@ -214,27 +278,31 @@ AC_DEFUN([OPAL_SETUP_RUNPATH],[
 # for each of them.  Then also add in an RPATH for @{libdir} (which
 # will be replaced by the wrapper compile to the installdir libdir at
 # runtime), and the RUNPATH args, if we have them.
-AC_DEFUN([RPATHIFY_LDFLAGS],[
+AC_DEFUN([RPATHIFY_LDFLAGS_INTERNAL],[
     OPAL_VAR_SCOPE_PUSH([rpath_out rpath_dir rpath_tmp])
     AS_IF([test "$enable_wrapper_rpath" = "yes" && test "$WRAPPER_RPATH_SUPPORT" != "disabled" && test "$WRAPPER_RPATH_SUPPORT" != "unnecessary"], [
            rpath_out=""
            for val in ${$1}; do
                case $val in
                -L*)
                    rpath_dir=`echo $val | cut -c3-`
-                   rpath_tmp=`echo $rpath_args | sed -e s@LIBDIR@$rpath_dir@`
+                   rpath_tmp=`echo ${$2} | sed -e s@LIBDIR@$rpath_dir@`
                    rpath_out="$rpath_out $rpath_tmp"
                    ;;
                esac
            done
 
            # Now add in the RPATH args for @{libdir}, and the RUNPATH args
-           rpath_tmp=`echo $rpath_args | sed -e s/LIBDIR/@{libdir}/`
-           $1="${$1} $rpath_out $rpath_tmp $runpath_args"
+           rpath_tmp=`echo ${$2} | sed -e s/LIBDIR/@{libdir}/`
+           $1="${$1} $rpath_out $rpath_tmp ${$3}"
           ])
     OPAL_VAR_SCOPE_POP
 ])
 
+AC_DEFUN([RPATHIFY_LDFLAGS],[RPATHIFY_LDFLAGS_INTERNAL([$1], [rpath_args], [runpath_args])])
+
+AC_DEFUN([RPATHIFY_FC_LDFLAGS],[RPATHIFY_LDFLAGS_INTERNAL([$1], [rpath_fc_args], [runpath_fc_args])])
+
 
 dnl
 dnl Avoid some repetitive code below
@@ -430,9 +498,12 @@ AC_DEFUN([OPAL_SETUP_WRAPPER_FINAL],[
 
        AC_MSG_CHECKING([for OMPI LDFLAGS])
        OMPI_WRAPPER_EXTRA_LDFLAGS="$ompi_mca_wrapper_extra_ldflags $wrapper_extra_ldflags $with_wrapper_ldflags"
+       OMPI_WRAPPER_EXTRA_FC_LDFLAGS=$OMPI_WRAPPER_EXTRA_LDFLAGS
        RPATHIFY_LDFLAGS([OMPI_WRAPPER_EXTRA_LDFLAGS])
        AC_SUBST([OMPI_WRAPPER_EXTRA_LDFLAGS])
        AC_MSG_RESULT([$OMPI_WRAPPER_EXTRA_LDFLAGS])
+       RPATHIFY_FC_LDFLAGS([OMPI_WRAPPER_EXTRA_FC_LDFLAGS])
+       AC_SUBST([OMPI_WRAPPER_EXTRA_FC_LDFLAGS])
 
        # Convert @{libdir} to ${libdir} for pkg-config
        _OPAL_SETUP_WRAPPER_FINAL_PKGCONFIG([OMPI])
@@ -441,6 +512,7 @@ AC_DEFUN([OPAL_SETUP_WRAPPER_FINAL],[
        OMPI_WRAPPER_EXTRA_LIBS="$ompi_mca_wrapper_extra_libs"
        OPAL_FLAGS_APPEND_UNIQ([OMPI_WRAPPER_EXTRA_LIBS], [$wrapper_extra_libs])
        OMPI_WRAPPER_EXTRA_LIBS="$OMPI_WRAPPER_EXTRA_LIBS $with_wrapper_libs"
+       OPAL_FLAGS_APPEND_UNIQ([OMPI_WRAPPER_EXTRA_LIBS], [$LIBS])
        AC_SUBST([OMPI_WRAPPER_EXTRA_LIBS])
        AC_MSG_RESULT([$OMPI_WRAPPER_EXTRA_LIBS])
 

ompi/tools/wrappers/mpifort-wrapper-data.txt.in

@@ -15,8 +15,8 @@ compiler=@FC@
 module_option=@OMPI_FC_MODULE_FLAG@
 extra_includes=
 preprocessor_flags=
-compiler_flags=@OMPI_WRAPPER_EXTRA_FCFLAGS@ 
-linker_flags=@OMPI_WRAPPER_EXTRA_LDFLAGS@
+compiler_flags=@OMPI_WRAPPER_EXTRA_FCFLAGS@
+linker_flags=@OMPI_WRAPPER_EXTRA_FC_LDFLAGS@
 # Note that per https://svn.open-mpi.org/trac/ompi/ticket/3422, we
 # intentionally only link in the MPI libraries (ORTE, OPAL, etc. are
 # pulled in implicitly) because we intend MPI applications to only use

oshmem/tools/wrappers/shmemfort-wrapper-data.txt.in

@@ -23,7 +23,7 @@ compiler_flags_env=FCFLAGS
 compiler=@FC@
 preprocessor_flags=
 compiler_flags=@OMPI_WRAPPER_EXTRA_FCFLAGS@
-linker_flags=@OMPI_WRAPPER_EXTRA_LDFLAGS@ 
+linker_flags=@OMPI_WRAPPER_EXTRA_FC_LDFLAGS@
 # Note that per https://svn.open-mpi.org/trac/ompi/ticket/3422, we
 # intentionally only link in the SHMEM and MPI libraries (ORTE, OPAL,
 # etc. are pulled in implicitly) because we intend SHMEM/MPI