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content/en/case-studies/blackhole-image.md

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@@ -3,13 +3,13 @@ title: "Case Study: First Image of a Black Hole"
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sidebar: false
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---
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{{< figure >}}
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src = '/images/content_images/cs/blackhole.jpg'
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title = 'Black Hole M87'
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alt = 'black hole image'
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attribution = '(Image Credits: Event Horizon Telescope Collaboration)'
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attributionlink = 'https://www.jpl.nasa.gov/images/universe/20190410/blackhole20190410.jpg'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/blackhole.jpg"
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title="Black Hole M87"
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alt="black hole image"
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attribution="(Image Credits: Event Horizon Telescope Collaboration)"
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attributionlink="https://www.jpl.nasa.gov/images/universe/20190410/blackhole20190410.jpg"
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>}}
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{{< blockquote
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cite="https://www.youtube.com/watch?v=BIvezCVcsYs"
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When the goal is to see something never before seen, how can scientists be
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confident the image is correct?
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{{< figure >}}
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src = '/images/content_images/cs/dataprocessbh.png'
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title = 'EHT Data Processing Pipeline'
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alt = 'data pipeline'
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align = 'center'
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attribution = '(Diagram Credits: The Astrophysical Journal, Event Horizon Telescope Collaboration)'
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attributionlink = 'https://iopscience.iop.org/article/10.3847/2041-8213/ab0c57'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/dataprocessbh.png"
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title="EHT Data Processing Pipeline"
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alt="data pipeline"
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align="center"
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attribution="(Diagram Credits: The Astrophysical Journal, Event Horizon Telescope Collaboration)"
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attributionlink="https://iopscience.iop.org/article/10.3847/2041-8213/ab0c57"
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>}}
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## NumPy’s Role
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Their work illustrates the role the scientific Python ecosystem plays in
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advancing science through collaborative data analysis.
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{{< figure >}}
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src = '/images/content_images/cs/bh_numpy_role.png'
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alt = 'role of numpy'
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title = 'The role of NumPy in Black Hole imaging'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/bh_numpy_role.png"
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alt="role of numpy"
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title="The role of NumPy in Black Hole imaging"
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>}}
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For example, the [`eht-imaging`][ehtim] Python package provides tools for
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simulating and performing image reconstruction on VLBI data.
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NumPy is at the core of array data processing used
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in this package, as illustrated by the partial software
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dependency chart below.
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{{< figure >}}
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src = '/images/content_images/cs/ehtim_numpy.png'
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alt = 'ehtim dependency map highlighting numpy'
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title = 'Software dependency chart of ehtim package highlighting NumPy'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/ehtim_numpy.png"
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alt="ehtim dependency map highlighting numpy"
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title="Software dependency chart of ehtim package highlighting NumPy"
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>}}
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[ehtim]: https://github.com/achael/eht-imaging
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techniques, improving upon existing astronomical models, helped unfold a
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mystery of the universe.
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{{< figure >}}
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src = '/images/content_images/cs/numpy_bh_benefits.png'
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alt = 'numpy benefits'
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title = 'Key NumPy Capabilities utilized'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/numpy_bh_benefits.png"
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alt="numpy benefits"
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title="Key NumPy Capabilities utilized"
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>}}

content/en/case-studies/cricket-analytics.md

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@@ -3,13 +3,13 @@ title: "Case Study: Cricket Analytics, the game changer!"
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sidebar: false
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---
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{{< figure >}}
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src = '/images/content_images/cs/ipl-stadium.png'
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title = 'IPLT20, the biggest Cricket Festival in India'
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alt = 'Indian Premier League Cricket cup and stadium'
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attribution = '(Image credits: IPLT20 (cup and logo) & Akash Yadav (stadium))'
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attributionlink = 'https://unsplash.com/@aksh1802'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/ipl-stadium.png"
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title="IPLT20, the biggest Cricket Festival in India"
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alt="Indian Premier League Cricket cup and stadium"
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attribution="(Image credits: IPLT20 (cup and logo) & Akash Yadav (stadium))"
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attributionlink="https://unsplash.com/@aksh180"
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>}}
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{{< blockquote
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cite="https://www.scoopwhoop.com/sports/ms-dhoni/"
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* gaining insights into fitness and performance of a player against different opposition,
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* player contribution to wins and losses for making strategic decisions on team composition
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{{< figure >}}
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src = '/images/content_images/cs/cricket-pitch.png'
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title = 'Cricket Pitch, the focal point in the field'
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alt = 'A cricket pitch with bowler and batsmen'
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align = 'center'
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attribution = '(Image credit: Debarghya Das)'
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attributionlink = 'http://debarghyadas.com/files/IPLpaper.pdf'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/cricket-pitch.png"
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title="Cricket Pitch, the focal point in the field"
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alt="A cricket pitch with bowler and batsmen"
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align="center"
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attribution="(Image credit: Debarghya Das)"
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attributionlink="http://debarghyadas.com/files/IPLpaper.pdf"
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>}}
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### Key Data Analytics Objectives
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number crunching and data science know-how, visualization tools and capability
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to include newer observations in the analysis.
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{{< figure >}}
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src = '/images/content_images/cs/player-pose-estimator.png'
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alt = 'pose estimator'
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title = 'Cricket Pose Estimator'
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attribution = '(Image credit: connect.vin)'
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attributionlink = 'https://connect.vin/2019/05/ai-for-cricket-batsman-pose-analysis/'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/player-pose-estimator.png"
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alt="pose estimator"
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title="Cricket Pose Estimator"
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attribution="(Image credit: connect.vin)"
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attributionlink="https://connect.vin/2019/05/ai-for-cricket-batsman-pose-analysis/"
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>}}
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### The Challenges
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cricket match helps the stakeholders to take notice of game insights that are
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otherwise hidden in numbers and statistics.
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{{< figure >}}
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src = '/images/content_images/cs/numpy_ca_benefits.png'
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alt = 'Diagram showing benefits of using NumPy for cricket analytics'
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title = 'Key NumPy Capabilities utilized'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/numpy_ca_benefits.png"
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alt="Diagram showing benefits of using NumPy for cricket analytics"
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title="Key NumPy Capabilities utilized"
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>}}

content/en/case-studies/deeplabcut-dnn.md

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@@ -3,13 +3,13 @@ title: "Case Study: DeepLabCut 3D Pose Estimation"
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---
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{{< figure >}}
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src = '/images/content_images/cs/mice-hand.gif'
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title = 'Analyzing mice hand-movement using DeepLapCut'
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alt = 'micehandanim'
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attribution = '(Source: www.deeplabcut.org )'
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attributionlink = 'http://www.mousemotorlab.org/deeplabcut'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/mice-hand.gif"
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title="Analyzing mice hand-movement using DeepLapCut"
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alt="micehandanim"
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attribution="(Source: www.deeplabcut.org )"
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attributionlink="http://www.mousemotorlab.org/deeplabcut"
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>}}
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{{< blockquote
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cite="https://news.harvard.edu/gazette/story/newsplus/harvard-researchers-awarded-czi-open-source-award/"
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Several areas of research, including neuroscience, medicine, and biomechanics, use data from tracking animal movement. DeepLabCut helps in understanding what humans and other animals are doing by parsing actions that have been recorded on film. Using automation for laborious tasks of tagging and monitoring, along with deep neural network based data analysis, DeepLabCut makes scientific studies involving observing animals, such as primates, mice, fish, flies etc., much faster and more accurate.
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{{< figure >}}
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src = '/images/content_images/cs/race-horse.gif'
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title = 'Colored dots track the positions of a racehorse’s body part'
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alt = 'horserideranim'
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attribution = '(Source: Mackenzie Mathis)'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/race-horse.gif"
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title="Colored dots track the positions of a racehorse’s body part"
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alt="horserideranim"
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attribution="(Source: Mackenzie Mathis)"
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>}}
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DeepLabCut's non-invasive behavioral tracking of animals by extracting the poses of animals is crucial for scientific pursuits in domains such as biomechanics, genetics, ethology & neuroscience. Measuring animal poses non-invasively from video - without markers - in dynamically changing backgrounds is computationally challenging, both technically as well as in terms of resource needs and training data required.
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- code for large-scale inference on videos
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- draw inferences using integrated visualization tools
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{{< figure >}}
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src = '/images/content_images/cs/deeplabcut-toolkit-steps.png'
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title = 'Pose estimation steps with DeepLabCut'
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alt = 'dlcsteps'
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align = 'center'
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attribution = '(Source: DeepLabCut)'
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attributionlink = 'https://twitter.com/DeepLabCut/status/1198046918284210176/photo/1'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/deeplabcut-toolkit-steps.png"
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title="Pose estimation steps with DeepLabCut"
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alt="dlcsteps"
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align="center"
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attribution="(Source: DeepLabCut)"
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attributionlink="https://twitter.com/DeepLabCut/status/1198046918284210176/photo/1"
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>}}
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[DLCToolkit]: https://github.com/DeepLabCut/DeepLabCut
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arrays corresponding to various images, target tensors and keypoints is
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fairly challenging.
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src = '/images/content_images/cs/pose-estimation.png'
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title = 'Pose estimation variety and complexity'
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alt = 'challengesfig'
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align = 'center'
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attribution = '(Source: Mackenzie Mathis)'
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attributionlink = 'https://www.biorxiv.org/content/10.1101/476531v1.full.pdf'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/pose-estimation.png"
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title="Pose estimation variety and complexity"
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alt="challengesfig"
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align="center"
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attribution="(Source: Mackenzie Mathis)"
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attributionlink="https://www.biorxiv.org/content/10.1101/476531v1.full.pdf"
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>}}
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## NumPy's Role in meeting Pose Estimation Challenges
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the most likely predictions from target scoremaps need to extracted and one
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title = 'DeepLabCut Workflow'
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alt = 'workflow'
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attribution = '(Source: Mackenzie Mathis)'
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attributionlink = 'https://www.researchgate.net/figure/DeepLabCut-work-flow-The-diagram-delineates-the-work-flow-as-well-as-the-directory-and_fig1_329185962'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/deeplabcut-workflow.png"
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title="DeepLabCut Workflow"
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alt="workflow"
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attribution="(Source: Mackenzie Mathis)"
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attributionlink="https://www.researchgate.net/figure/DeepLabCut-work-flow-The-diagram-delineates-the-work-flow-as-well-as-the-directory-and_fig1_329185962"
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>}}
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## Summary
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challenges faced by DeepLabCut algorithms are addressed through the use of
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{{< figure >}}
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src = '/images/content_images/cs/numpy_dlc_benefits.png'
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title = 'Key NumPy Capabilities utilized'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/numpy_dlc_benefits.png"
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alt="numpy benefits"
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title="Key NumPy Capabilities utilized"
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>}}

content/en/case-studies/gw-discov.md

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{{< figure >}}
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title = 'Gravitational Waves'
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alt = 'binary coalesce black hole generating gravitational waves'
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attribution = '(Image Credits: The Simulating eXtreme Spacetimes (SXS) Project at LIGO)'
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attributionlink = 'https://youtu.be/Zt8Z_uzG71o'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/gw_sxs_image.png"
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title="Gravitational Waves"
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alt="binary coalesce black hole generating gravitational waves"
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attribution="(Image Credits: The Simulating eXtreme Spacetimes (SXS) Project at LIGO)"
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attributionlink="https://youtu.be/Zt8Z_uzG71o"
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>}}
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{{< blockquote
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cite="https://www.youtube.com/watch?v=BIvezCVcsYs"
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simulations using latest experimental inputs and insights can be a time
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{{< figure >}}
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src = '/images/content_images/cs/gw_strain_amplitude.png'
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alt = 'gravitational waves strain amplitude'
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title = 'Estimated gravitational-wave strain amplitude from GW150914'
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attribution = '(Graph Credits: Observation of Gravitational Waves from a Binary Black Hole Merger, ResearchGate Publication)'
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attributionlink = 'https://www.researchgate.net/publication/293886905_Observation_of_Gravitational_Waves_from_a_Binary_Black_Hole_Merger'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/gw_strain_amplitude.png"
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alt="gravitational waves strain amplitude"
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title="Estimated gravitational-wave strain amplitude from GW150914"
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attribution="(Graph Credits: Observation of Gravitational Waves from a Binary Black Hole Merger, ResearchGate Publication)"
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attributionlink="https://www.researchgate.net/publication/293886905_Observation_of_Gravitational_Waves_from_a_Binary_Black_Hole_Merger"
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>}}
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## NumPy’s Role in the Detection of Gravitational Waves
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providing object based interfaces to utilities, tools, and methods for
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src = '/images/content_images/cs/gwpy-numpy-dep-graph.png'
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title = 'Dependency graph showing how GwPy package depends on NumPy'
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{{< /figure >}}
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{{< figure
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src="/images/content_images/cs/gwpy-numpy-dep-graph.png"
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alt="gwpy-numpy depgraph"
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title="Dependency graph showing how GwPy package depends on NumPy"
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>}}
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src = '/images/content_images/cs/PyCBC-numpy-dep-graph.png'
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src="/images/content_images/cs/PyCBC-numpy-dep-graph.png"
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alt="PyCBC-numpy depgraph"
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title="Dependency graph showing how PyCBC package depends on NumPy"
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>}}
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## Summary
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{{< figure >}}
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src = '/images/content_images/cs/numpy_gw_benefits.png'
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title = 'Key NumPy Capabilities utilized'
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src="/images/content_images/cs/numpy_gw_benefits.png"
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alt="numpy benefits"
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title="Key NumPy Capabilities utilized"
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>}}

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