diff --git a/examples/test_spm.py b/examples/test_spm.py index 4162a39769..da35185329 100644 --- a/examples/test_spm.py +++ b/examples/test_spm.py @@ -15,8 +15,8 @@ stc.inputs.num_slices = 21 stc.inputs.time_repetition = 1.0 stc.inputs.time_acquisition = 2. - 2. / 32 -stc.inputs.slice_order = list(range(21, 0, -1)) -stc.inputs.ref_slice = 10 +stc.inputs.slice_order = list(range(21, 0, -1)) +stc.inputs.ref_slice = 10 realign_estimate = pe.Node(interface=spm.Realign(), name='realign_estimate') realign_estimate.inputs.jobtype = "estimate" @@ -50,8 +50,8 @@ stc.inputs.num_slices = 21 stc.inputs.time_repetition = 1.0 stc.inputs.time_acquisition = 2. - 2. / 32 -stc.inputs.slice_order = list(range(21, 0, -1)) -stc.inputs.ref_slice = 10 +stc.inputs.slice_order = list(range(21, 0, -1)) +stc.inputs.ref_slice = 10 realign_estimate = pe.Node(interface=spm.Realign(), name='realign_estimate') realign_estimate.inputs.jobtype = "estimate" diff --git a/nipype/algorithms/tests/test_auto_AddCSVColumn.py b/nipype/algorithms/tests/test_auto_AddCSVColumn.py index 14b6dfb452..89a52b8abe 100644 --- a/nipype/algorithms/tests/test_auto_AddCSVColumn.py +++ b/nipype/algorithms/tests/test_auto_AddCSVColumn.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import AddCSVColumn + def test_AddCSVColumn_inputs(): input_map = dict(extra_column_heading=dict(), extra_field=dict(), @@ -16,6 +17,7 @@ def test_AddCSVColumn_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_AddCSVColumn_outputs(): output_map = dict(csv_file=dict(), ) @@ -24,4 +26,3 @@ def test_AddCSVColumn_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_AddCSVRow.py b/nipype/algorithms/tests/test_auto_AddCSVRow.py index 766665a816..eaac3370c9 100644 --- a/nipype/algorithms/tests/test_auto_AddCSVRow.py +++ b/nipype/algorithms/tests/test_auto_AddCSVRow.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import AddCSVRow + def test_AddCSVRow_inputs(): input_map = dict(_outputs=dict(usedefault=True, ), @@ -17,6 +18,7 @@ def test_AddCSVRow_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_AddCSVRow_outputs(): output_map = dict(csv_file=dict(), ) @@ -25,4 +27,3 @@ def test_AddCSVRow_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_AddNoise.py b/nipype/algorithms/tests/test_auto_AddNoise.py index 747bf51a21..50aa563ce0 100644 --- a/nipype/algorithms/tests/test_auto_AddNoise.py +++ b/nipype/algorithms/tests/test_auto_AddNoise.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import AddNoise + def test_AddNoise_inputs(): input_map = dict(bg_dist=dict(mandatory=True, usedefault=True, @@ -22,6 +23,7 @@ def test_AddNoise_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_AddNoise_outputs(): output_map = dict(out_file=dict(), ) @@ -30,4 +32,3 @@ def test_AddNoise_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_ArtifactDetect.py b/nipype/algorithms/tests/test_auto_ArtifactDetect.py index 4e1c5a1641..961b7dd2d0 100644 --- a/nipype/algorithms/tests/test_auto_ArtifactDetect.py +++ b/nipype/algorithms/tests/test_auto_ArtifactDetect.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..rapidart import ArtifactDetect + def test_ArtifactDetect_inputs(): input_map = dict(bound_by_brainmask=dict(usedefault=True, ), @@ -50,6 +51,7 @@ def test_ArtifactDetect_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ArtifactDetect_outputs(): output_map = dict(displacement_files=dict(), intensity_files=dict(), @@ -64,4 +66,3 @@ def test_ArtifactDetect_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_CalculateNormalizedMoments.py b/nipype/algorithms/tests/test_auto_CalculateNormalizedMoments.py index f779679928..62a7b67b0c 100644 --- a/nipype/algorithms/tests/test_auto_CalculateNormalizedMoments.py +++ b/nipype/algorithms/tests/test_auto_CalculateNormalizedMoments.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import CalculateNormalizedMoments + def test_CalculateNormalizedMoments_inputs(): input_map = dict(moment=dict(mandatory=True, ), @@ -14,6 +15,7 @@ def test_CalculateNormalizedMoments_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CalculateNormalizedMoments_outputs(): output_map = dict(moments=dict(), ) @@ -22,4 +24,3 @@ def test_CalculateNormalizedMoments_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_ComputeMeshWarp.py b/nipype/algorithms/tests/test_auto_ComputeMeshWarp.py index b1727ca477..e0a2d5f85c 100644 --- a/nipype/algorithms/tests/test_auto_ComputeMeshWarp.py +++ b/nipype/algorithms/tests/test_auto_ComputeMeshWarp.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..mesh import ComputeMeshWarp + def test_ComputeMeshWarp_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -25,6 +26,7 @@ def test_ComputeMeshWarp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ComputeMeshWarp_outputs(): output_map = dict(distance=dict(), out_file=dict(), @@ -35,4 +37,3 @@ def test_ComputeMeshWarp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_CreateNifti.py b/nipype/algorithms/tests/test_auto_CreateNifti.py index 62c0926bb9..0e12142783 100644 --- a/nipype/algorithms/tests/test_auto_CreateNifti.py +++ b/nipype/algorithms/tests/test_auto_CreateNifti.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import CreateNifti + def test_CreateNifti_inputs(): input_map = dict(affine=dict(), data_file=dict(mandatory=True, @@ -18,6 +19,7 @@ def test_CreateNifti_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CreateNifti_outputs(): output_map = dict(nifti_file=dict(), ) @@ -26,4 +28,3 @@ def test_CreateNifti_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_Distance.py b/nipype/algorithms/tests/test_auto_Distance.py index 9ae3e7f9b0..4e5da64ba9 100644 --- a/nipype/algorithms/tests/test_auto_Distance.py +++ b/nipype/algorithms/tests/test_auto_Distance.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import Distance + def test_Distance_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -20,6 +21,7 @@ def test_Distance_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Distance_outputs(): output_map = dict(distance=dict(), histogram=dict(), @@ -31,4 +33,3 @@ def test_Distance_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_FuzzyOverlap.py b/nipype/algorithms/tests/test_auto_FuzzyOverlap.py index b303866349..dbc0c02474 100644 --- a/nipype/algorithms/tests/test_auto_FuzzyOverlap.py +++ b/nipype/algorithms/tests/test_auto_FuzzyOverlap.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import FuzzyOverlap + def test_FuzzyOverlap_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -21,6 +22,7 @@ def test_FuzzyOverlap_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FuzzyOverlap_outputs(): output_map = dict(class_fdi=dict(), class_fji=dict(), @@ -33,4 +35,3 @@ def test_FuzzyOverlap_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_Gunzip.py b/nipype/algorithms/tests/test_auto_Gunzip.py index ad48e0b405..b77e6dfbd5 100644 --- a/nipype/algorithms/tests/test_auto_Gunzip.py +++ b/nipype/algorithms/tests/test_auto_Gunzip.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import Gunzip + def test_Gunzip_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -15,6 +16,7 @@ def test_Gunzip_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Gunzip_outputs(): output_map = dict(out_file=dict(), ) @@ -23,4 +25,3 @@ def test_Gunzip_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_ICC.py b/nipype/algorithms/tests/test_auto_ICC.py index 292e8ae7a8..76b70b3369 100644 --- a/nipype/algorithms/tests/test_auto_ICC.py +++ b/nipype/algorithms/tests/test_auto_ICC.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..icc import ICC + def test_ICC_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -17,6 +18,7 @@ def test_ICC_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ICC_outputs(): output_map = dict(icc_map=dict(), session_var_map=dict(), @@ -27,4 +29,3 @@ def test_ICC_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_Matlab2CSV.py b/nipype/algorithms/tests/test_auto_Matlab2CSV.py index 41f91baebd..1382385dc3 100644 --- a/nipype/algorithms/tests/test_auto_Matlab2CSV.py +++ b/nipype/algorithms/tests/test_auto_Matlab2CSV.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import Matlab2CSV + def test_Matlab2CSV_inputs(): input_map = dict(in_file=dict(mandatory=True, ), @@ -14,6 +15,7 @@ def test_Matlab2CSV_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Matlab2CSV_outputs(): output_map = dict(csv_files=dict(), ) @@ -22,4 +24,3 @@ def test_Matlab2CSV_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_MergeCSVFiles.py b/nipype/algorithms/tests/test_auto_MergeCSVFiles.py index d63189e1ab..4d2d896db3 100644 --- a/nipype/algorithms/tests/test_auto_MergeCSVFiles.py +++ b/nipype/algorithms/tests/test_auto_MergeCSVFiles.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import MergeCSVFiles + def test_MergeCSVFiles_inputs(): input_map = dict(column_headings=dict(), extra_column_heading=dict(), @@ -20,6 +21,7 @@ def test_MergeCSVFiles_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MergeCSVFiles_outputs(): output_map = dict(csv_file=dict(), ) @@ -28,4 +30,3 @@ def test_MergeCSVFiles_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_MergeROIs.py b/nipype/algorithms/tests/test_auto_MergeROIs.py index 6fc41742f8..83eed3a4d4 100644 --- a/nipype/algorithms/tests/test_auto_MergeROIs.py +++ b/nipype/algorithms/tests/test_auto_MergeROIs.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import MergeROIs + def test_MergeROIs_inputs(): input_map = dict(in_files=dict(), in_index=dict(), @@ -13,6 +14,7 @@ def test_MergeROIs_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MergeROIs_outputs(): output_map = dict(merged_file=dict(), ) @@ -21,4 +23,3 @@ def test_MergeROIs_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_MeshWarpMaths.py b/nipype/algorithms/tests/test_auto_MeshWarpMaths.py index 21a34fb9b8..dfd4c5bd63 100644 --- a/nipype/algorithms/tests/test_auto_MeshWarpMaths.py +++ b/nipype/algorithms/tests/test_auto_MeshWarpMaths.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..mesh import MeshWarpMaths + def test_MeshWarpMaths_inputs(): input_map = dict(float_trait=dict(), ignore_exception=dict(nohash=True, @@ -24,6 +25,7 @@ def test_MeshWarpMaths_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MeshWarpMaths_outputs(): output_map = dict(out_file=dict(), out_warp=dict(), @@ -33,4 +35,3 @@ def test_MeshWarpMaths_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_ModifyAffine.py b/nipype/algorithms/tests/test_auto_ModifyAffine.py index 7817620e1b..fb8c5ca876 100644 --- a/nipype/algorithms/tests/test_auto_ModifyAffine.py +++ b/nipype/algorithms/tests/test_auto_ModifyAffine.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import ModifyAffine + def test_ModifyAffine_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -17,6 +18,7 @@ def test_ModifyAffine_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ModifyAffine_outputs(): output_map = dict(transformed_volumes=dict(), ) @@ -25,4 +27,3 @@ def test_ModifyAffine_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_NormalizeProbabilityMapSet.py b/nipype/algorithms/tests/test_auto_NormalizeProbabilityMapSet.py index 49a7035037..c2595baa72 100644 --- a/nipype/algorithms/tests/test_auto_NormalizeProbabilityMapSet.py +++ b/nipype/algorithms/tests/test_auto_NormalizeProbabilityMapSet.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import NormalizeProbabilityMapSet + def test_NormalizeProbabilityMapSet_inputs(): input_map = dict(in_files=dict(), in_mask=dict(), @@ -12,6 +13,7 @@ def test_NormalizeProbabilityMapSet_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_NormalizeProbabilityMapSet_outputs(): output_map = dict(out_files=dict(), ) @@ -20,4 +22,3 @@ def test_NormalizeProbabilityMapSet_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_P2PDistance.py b/nipype/algorithms/tests/test_auto_P2PDistance.py index fa8f582fd4..0a30a382c9 100644 --- a/nipype/algorithms/tests/test_auto_P2PDistance.py +++ b/nipype/algorithms/tests/test_auto_P2PDistance.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..mesh import P2PDistance + def test_P2PDistance_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -25,6 +26,7 @@ def test_P2PDistance_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_P2PDistance_outputs(): output_map = dict(distance=dict(), out_file=dict(), @@ -35,4 +37,3 @@ def test_P2PDistance_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_PickAtlas.py b/nipype/algorithms/tests/test_auto_PickAtlas.py index a60645a368..27aaac7d41 100644 --- a/nipype/algorithms/tests/test_auto_PickAtlas.py +++ b/nipype/algorithms/tests/test_auto_PickAtlas.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import PickAtlas + def test_PickAtlas_inputs(): input_map = dict(atlas=dict(mandatory=True, ), @@ -22,6 +23,7 @@ def test_PickAtlas_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_PickAtlas_outputs(): output_map = dict(mask_file=dict(), ) @@ -30,4 +32,3 @@ def test_PickAtlas_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_Similarity.py b/nipype/algorithms/tests/test_auto_Similarity.py index a69dcb5f1b..109933677c 100644 --- a/nipype/algorithms/tests/test_auto_Similarity.py +++ b/nipype/algorithms/tests/test_auto_Similarity.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..metrics import Similarity + def test_Similarity_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -21,6 +22,7 @@ def test_Similarity_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Similarity_outputs(): output_map = dict(similarity=dict(), ) @@ -29,4 +31,3 @@ def test_Similarity_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_SimpleThreshold.py b/nipype/algorithms/tests/test_auto_SimpleThreshold.py index f0840a6fd9..ff46592c11 100644 --- a/nipype/algorithms/tests/test_auto_SimpleThreshold.py +++ b/nipype/algorithms/tests/test_auto_SimpleThreshold.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import SimpleThreshold + def test_SimpleThreshold_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -17,6 +18,7 @@ def test_SimpleThreshold_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SimpleThreshold_outputs(): output_map = dict(thresholded_volumes=dict(), ) @@ -25,4 +27,3 @@ def test_SimpleThreshold_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_SpecifyModel.py b/nipype/algorithms/tests/test_auto_SpecifyModel.py index ca3ccc69d3..69a528c3c2 100644 --- a/nipype/algorithms/tests/test_auto_SpecifyModel.py +++ b/nipype/algorithms/tests/test_auto_SpecifyModel.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..modelgen import SpecifyModel + def test_SpecifyModel_inputs(): input_map = dict(event_files=dict(mandatory=True, xor=['subject_info', 'event_files'], @@ -32,6 +33,7 @@ def test_SpecifyModel_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SpecifyModel_outputs(): output_map = dict(session_info=dict(), ) @@ -40,4 +42,3 @@ def test_SpecifyModel_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_SpecifySPMModel.py b/nipype/algorithms/tests/test_auto_SpecifySPMModel.py index e0c300b621..19ccaa9ba5 100644 --- a/nipype/algorithms/tests/test_auto_SpecifySPMModel.py +++ b/nipype/algorithms/tests/test_auto_SpecifySPMModel.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..modelgen import SpecifySPMModel + def test_SpecifySPMModel_inputs(): input_map = dict(concatenate_runs=dict(usedefault=True, ), @@ -36,6 +37,7 @@ def test_SpecifySPMModel_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SpecifySPMModel_outputs(): output_map = dict(session_info=dict(), ) @@ -44,4 +46,3 @@ def test_SpecifySPMModel_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_SpecifySparseModel.py b/nipype/algorithms/tests/test_auto_SpecifySparseModel.py index b8601014e1..aa641facf7 100644 --- a/nipype/algorithms/tests/test_auto_SpecifySparseModel.py +++ b/nipype/algorithms/tests/test_auto_SpecifySparseModel.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..modelgen import SpecifySparseModel + def test_SpecifySparseModel_inputs(): input_map = dict(event_files=dict(mandatory=True, xor=['subject_info', 'event_files'], @@ -46,6 +47,7 @@ def test_SpecifySparseModel_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SpecifySparseModel_outputs(): output_map = dict(session_info=dict(), sparse_png_file=dict(), @@ -56,4 +58,3 @@ def test_SpecifySparseModel_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_SplitROIs.py b/nipype/algorithms/tests/test_auto_SplitROIs.py index 553f937a1c..cd23a51468 100644 --- a/nipype/algorithms/tests/test_auto_SplitROIs.py +++ b/nipype/algorithms/tests/test_auto_SplitROIs.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import SplitROIs + def test_SplitROIs_inputs(): input_map = dict(in_file=dict(mandatory=True, ), @@ -14,6 +15,7 @@ def test_SplitROIs_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SplitROIs_outputs(): output_map = dict(out_files=dict(), out_index=dict(), @@ -24,4 +26,3 @@ def test_SplitROIs_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_StimulusCorrelation.py b/nipype/algorithms/tests/test_auto_StimulusCorrelation.py index 3f7f9ed11b..f1b786aa8e 100644 --- a/nipype/algorithms/tests/test_auto_StimulusCorrelation.py +++ b/nipype/algorithms/tests/test_auto_StimulusCorrelation.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..rapidart import StimulusCorrelation + def test_StimulusCorrelation_inputs(): input_map = dict(concatenated_design=dict(mandatory=True, ), @@ -21,6 +22,7 @@ def test_StimulusCorrelation_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_StimulusCorrelation_outputs(): output_map = dict(stimcorr_files=dict(), ) @@ -29,4 +31,3 @@ def test_StimulusCorrelation_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_TSNR.py b/nipype/algorithms/tests/test_auto_TSNR.py index 1ea1bc6192..044712c362 100644 --- a/nipype/algorithms/tests/test_auto_TSNR.py +++ b/nipype/algorithms/tests/test_auto_TSNR.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..misc import TSNR + def test_TSNR_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -16,6 +17,7 @@ def test_TSNR_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TSNR_outputs(): output_map = dict(detrended_file=dict(), mean_file=dict(), @@ -27,4 +29,3 @@ def test_TSNR_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/algorithms/tests/test_auto_WarpPoints.py b/nipype/algorithms/tests/test_auto_WarpPoints.py index 918a8eeb96..741b9f0c60 100644 --- a/nipype/algorithms/tests/test_auto_WarpPoints.py +++ b/nipype/algorithms/tests/test_auto_WarpPoints.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..mesh import WarpPoints + def test_WarpPoints_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -25,6 +26,7 @@ def test_WarpPoints_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_WarpPoints_outputs(): output_map = dict(out_points=dict(), ) @@ -33,4 +35,3 @@ def test_WarpPoints_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_AFNICommand.py b/nipype/interfaces/afni/tests/test_auto_AFNICommand.py index 14769735dd..f822168eb8 100644 --- a/nipype/interfaces/afni/tests/test_auto_AFNICommand.py +++ b/nipype/interfaces/afni/tests/test_auto_AFNICommand.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..base import AFNICommand + def test_AFNICommand_inputs(): input_map = dict(args=dict(argstr='%s', ), diff --git a/nipype/interfaces/afni/tests/test_auto_AFNItoNIFTI.py b/nipype/interfaces/afni/tests/test_auto_AFNItoNIFTI.py index 96334c4a20..1e46cccd56 100644 --- a/nipype/interfaces/afni/tests/test_auto_AFNItoNIFTI.py +++ b/nipype/interfaces/afni/tests/test_auto_AFNItoNIFTI.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import AFNItoNIFTI + def test_AFNItoNIFTI_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -30,6 +31,7 @@ def test_AFNItoNIFTI_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_AFNItoNIFTI_outputs(): output_map = dict(out_file=dict(), ) @@ -38,4 +40,3 @@ def test_AFNItoNIFTI_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Allineate.py b/nipype/interfaces/afni/tests/test_auto_Allineate.py index 6f30731692..27a1cc5dae 100644 --- a/nipype/interfaces/afni/tests/test_auto_Allineate.py +++ b/nipype/interfaces/afni/tests/test_auto_Allineate.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Allineate + def test_Allineate_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -110,6 +111,7 @@ def test_Allineate_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Allineate_outputs(): output_map = dict(matrix=dict(), out_file=dict(), @@ -119,4 +121,3 @@ def test_Allineate_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_AutoTcorrelate.py b/nipype/interfaces/afni/tests/test_auto_AutoTcorrelate.py index 312ab7ef90..0591a7eb7f 100644 --- a/nipype/interfaces/afni/tests/test_auto_AutoTcorrelate.py +++ b/nipype/interfaces/afni/tests/test_auto_AutoTcorrelate.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import AutoTcorrelate + def test_AutoTcorrelate_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -42,6 +43,7 @@ def test_AutoTcorrelate_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_AutoTcorrelate_outputs(): output_map = dict(out_file=dict(), ) @@ -50,4 +52,3 @@ def test_AutoTcorrelate_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Autobox.py b/nipype/interfaces/afni/tests/test_auto_Autobox.py index 184956660c..3a23e751a3 100644 --- a/nipype/interfaces/afni/tests/test_auto_Autobox.py +++ b/nipype/interfaces/afni/tests/test_auto_Autobox.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Autobox + def test_Autobox_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_Autobox_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Autobox_outputs(): output_map = dict(out_file=dict(), x_max=dict(), @@ -46,4 +48,3 @@ def test_Autobox_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Automask.py b/nipype/interfaces/afni/tests/test_auto_Automask.py index 514559fad6..5ee4b08162 100644 --- a/nipype/interfaces/afni/tests/test_auto_Automask.py +++ b/nipype/interfaces/afni/tests/test_auto_Automask.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Automask + def test_Automask_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_Automask_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Automask_outputs(): output_map = dict(brain_file=dict(), out_file=dict(), @@ -49,4 +51,3 @@ def test_Automask_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Bandpass.py b/nipype/interfaces/afni/tests/test_auto_Bandpass.py index bf4e819284..519d8fd501 100644 --- a/nipype/interfaces/afni/tests/test_auto_Bandpass.py +++ b/nipype/interfaces/afni/tests/test_auto_Bandpass.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Bandpass + def test_Bandpass_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -65,6 +66,7 @@ def test_Bandpass_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Bandpass_outputs(): output_map = dict(out_file=dict(), ) @@ -73,4 +75,3 @@ def test_Bandpass_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_BlurInMask.py b/nipype/interfaces/afni/tests/test_auto_BlurInMask.py index a911469623..276cf8a81f 100644 --- a/nipype/interfaces/afni/tests/test_auto_BlurInMask.py +++ b/nipype/interfaces/afni/tests/test_auto_BlurInMask.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import BlurInMask + def test_BlurInMask_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -47,6 +48,7 @@ def test_BlurInMask_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BlurInMask_outputs(): output_map = dict(out_file=dict(), ) @@ -55,4 +57,3 @@ def test_BlurInMask_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_BrickStat.py b/nipype/interfaces/afni/tests/test_auto_BrickStat.py index 6c423a2232..0c47101656 100644 --- a/nipype/interfaces/afni/tests/test_auto_BrickStat.py +++ b/nipype/interfaces/afni/tests/test_auto_BrickStat.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import BrickStat + def test_BrickStat_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -35,6 +36,7 @@ def test_BrickStat_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BrickStat_outputs(): output_map = dict(min_val=dict(), ) @@ -43,4 +45,3 @@ def test_BrickStat_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Calc.py b/nipype/interfaces/afni/tests/test_auto_Calc.py index b33fc3de88..c15431a5a8 100644 --- a/nipype/interfaces/afni/tests/test_auto_Calc.py +++ b/nipype/interfaces/afni/tests/test_auto_Calc.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Calc + def test_Calc_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -46,6 +47,7 @@ def test_Calc_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Calc_outputs(): output_map = dict(out_file=dict(), ) @@ -54,4 +56,3 @@ def test_Calc_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Copy.py b/nipype/interfaces/afni/tests/test_auto_Copy.py index c82385085e..fffc9267d1 100644 --- a/nipype/interfaces/afni/tests/test_auto_Copy.py +++ b/nipype/interfaces/afni/tests/test_auto_Copy.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Copy + def test_Copy_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_Copy_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Copy_outputs(): output_map = dict(out_file=dict(), ) @@ -39,4 +41,3 @@ def test_Copy_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Despike.py b/nipype/interfaces/afni/tests/test_auto_Despike.py index 51590348de..0e8c5876f9 100644 --- a/nipype/interfaces/afni/tests/test_auto_Despike.py +++ b/nipype/interfaces/afni/tests/test_auto_Despike.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Despike + def test_Despike_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -30,6 +31,7 @@ def test_Despike_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Despike_outputs(): output_map = dict(out_file=dict(), ) @@ -38,4 +40,3 @@ def test_Despike_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Detrend.py b/nipype/interfaces/afni/tests/test_auto_Detrend.py index b066a58b88..2fd8bf3d6f 100644 --- a/nipype/interfaces/afni/tests/test_auto_Detrend.py +++ b/nipype/interfaces/afni/tests/test_auto_Detrend.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Detrend + def test_Detrend_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -30,6 +31,7 @@ def test_Detrend_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Detrend_outputs(): output_map = dict(out_file=dict(), ) @@ -38,4 +40,3 @@ def test_Detrend_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Eval.py b/nipype/interfaces/afni/tests/test_auto_Eval.py index 3f9ad93ec5..0ca8e85bc0 100644 --- a/nipype/interfaces/afni/tests/test_auto_Eval.py +++ b/nipype/interfaces/afni/tests/test_auto_Eval.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Eval + def test_Eval_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -48,6 +49,7 @@ def test_Eval_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Eval_outputs(): output_map = dict(out_file=dict(), ) @@ -56,4 +58,3 @@ def test_Eval_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Fim.py b/nipype/interfaces/afni/tests/test_auto_Fim.py index a926568c3a..60aa963b28 100644 --- a/nipype/interfaces/afni/tests/test_auto_Fim.py +++ b/nipype/interfaces/afni/tests/test_auto_Fim.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Fim + def test_Fim_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_Fim_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Fim_outputs(): output_map = dict(out_file=dict(), ) @@ -48,4 +50,3 @@ def test_Fim_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Fourier.py b/nipype/interfaces/afni/tests/test_auto_Fourier.py index 0ae0aec8bf..0bc9e03b6c 100644 --- a/nipype/interfaces/afni/tests/test_auto_Fourier.py +++ b/nipype/interfaces/afni/tests/test_auto_Fourier.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Fourier + def test_Fourier_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -38,6 +39,7 @@ def test_Fourier_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Fourier_outputs(): output_map = dict(out_file=dict(), ) @@ -46,4 +48,3 @@ def test_Fourier_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Maskave.py b/nipype/interfaces/afni/tests/test_auto_Maskave.py index d85d2ad213..dbff513cc8 100644 --- a/nipype/interfaces/afni/tests/test_auto_Maskave.py +++ b/nipype/interfaces/afni/tests/test_auto_Maskave.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Maskave + def test_Maskave_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -38,6 +39,7 @@ def test_Maskave_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Maskave_outputs(): output_map = dict(out_file=dict(), ) @@ -46,4 +48,3 @@ def test_Maskave_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Means.py b/nipype/interfaces/afni/tests/test_auto_Means.py index 567f9d50d8..de764464b5 100644 --- a/nipype/interfaces/afni/tests/test_auto_Means.py +++ b/nipype/interfaces/afni/tests/test_auto_Means.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Means + def test_Means_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -48,6 +49,7 @@ def test_Means_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Means_outputs(): output_map = dict(out_file=dict(), ) @@ -56,4 +58,3 @@ def test_Means_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Merge.py b/nipype/interfaces/afni/tests/test_auto_Merge.py index 2513765f4f..9851b90b9c 100644 --- a/nipype/interfaces/afni/tests/test_auto_Merge.py +++ b/nipype/interfaces/afni/tests/test_auto_Merge.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Merge + def test_Merge_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -35,6 +36,7 @@ def test_Merge_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Merge_outputs(): output_map = dict(out_file=dict(), ) @@ -43,4 +45,3 @@ def test_Merge_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_ROIStats.py b/nipype/interfaces/afni/tests/test_auto_ROIStats.py index 5a72acb63b..447b5000f6 100644 --- a/nipype/interfaces/afni/tests/test_auto_ROIStats.py +++ b/nipype/interfaces/afni/tests/test_auto_ROIStats.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import ROIStats + def test_ROIStats_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -35,6 +36,7 @@ def test_ROIStats_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ROIStats_outputs(): output_map = dict(stats=dict(), ) @@ -43,4 +45,3 @@ def test_ROIStats_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Refit.py b/nipype/interfaces/afni/tests/test_auto_Refit.py index abd12546b4..124655276a 100644 --- a/nipype/interfaces/afni/tests/test_auto_Refit.py +++ b/nipype/interfaces/afni/tests/test_auto_Refit.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Refit + def test_Refit_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -41,6 +42,7 @@ def test_Refit_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Refit_outputs(): output_map = dict(out_file=dict(), ) @@ -49,4 +51,3 @@ def test_Refit_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Resample.py b/nipype/interfaces/afni/tests/test_auto_Resample.py index be5534f3de..8aa40f92ee 100644 --- a/nipype/interfaces/afni/tests/test_auto_Resample.py +++ b/nipype/interfaces/afni/tests/test_auto_Resample.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Resample + def test_Resample_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -38,6 +39,7 @@ def test_Resample_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Resample_outputs(): output_map = dict(out_file=dict(), ) @@ -46,4 +48,3 @@ def test_Resample_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Retroicor.py b/nipype/interfaces/afni/tests/test_auto_Retroicor.py index 5c9729e83b..2d5fb74175 100644 --- a/nipype/interfaces/afni/tests/test_auto_Retroicor.py +++ b/nipype/interfaces/afni/tests/test_auto_Retroicor.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Retroicor + def test_Retroicor_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -50,6 +51,7 @@ def test_Retroicor_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Retroicor_outputs(): output_map = dict(out_file=dict(), ) @@ -58,4 +60,3 @@ def test_Retroicor_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_SVMTest.py b/nipype/interfaces/afni/tests/test_auto_SVMTest.py index 86cc47f6d7..a1566c59f7 100644 --- a/nipype/interfaces/afni/tests/test_auto_SVMTest.py +++ b/nipype/interfaces/afni/tests/test_auto_SVMTest.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..svm import SVMTest + def test_SVMTest_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -42,6 +43,7 @@ def test_SVMTest_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SVMTest_outputs(): output_map = dict(out_file=dict(), ) @@ -50,4 +52,3 @@ def test_SVMTest_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_SVMTrain.py b/nipype/interfaces/afni/tests/test_auto_SVMTrain.py index 9006b45fb5..eb13dcb531 100644 --- a/nipype/interfaces/afni/tests/test_auto_SVMTrain.py +++ b/nipype/interfaces/afni/tests/test_auto_SVMTrain.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..svm import SVMTrain + def test_SVMTrain_inputs(): input_map = dict(alphas=dict(argstr='-alpha %s', name_source='in_file', @@ -61,6 +62,7 @@ def test_SVMTrain_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SVMTrain_outputs(): output_map = dict(alphas=dict(), model=dict(), @@ -71,4 +73,3 @@ def test_SVMTrain_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_SkullStrip.py b/nipype/interfaces/afni/tests/test_auto_SkullStrip.py index 2bcdb7a6b5..12449c331f 100644 --- a/nipype/interfaces/afni/tests/test_auto_SkullStrip.py +++ b/nipype/interfaces/afni/tests/test_auto_SkullStrip.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import SkullStrip + def test_SkullStrip_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -30,6 +31,7 @@ def test_SkullStrip_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SkullStrip_outputs(): output_map = dict(out_file=dict(), ) @@ -38,4 +40,3 @@ def test_SkullStrip_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_TCat.py b/nipype/interfaces/afni/tests/test_auto_TCat.py index 47aac8af8a..ce1e8fbaac 100644 --- a/nipype/interfaces/afni/tests/test_auto_TCat.py +++ b/nipype/interfaces/afni/tests/test_auto_TCat.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import TCat + def test_TCat_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_TCat_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TCat_outputs(): output_map = dict(out_file=dict(), ) @@ -41,4 +43,3 @@ def test_TCat_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_TCorr1D.py b/nipype/interfaces/afni/tests/test_auto_TCorr1D.py index 6de2ba4f07..96ebdbe3a6 100644 --- a/nipype/interfaces/afni/tests/test_auto_TCorr1D.py +++ b/nipype/interfaces/afni/tests/test_auto_TCorr1D.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import TCorr1D + def test_TCorr1D_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -51,6 +52,7 @@ def test_TCorr1D_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TCorr1D_outputs(): output_map = dict(out_file=dict(), ) @@ -59,4 +61,3 @@ def test_TCorr1D_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_TCorrMap.py b/nipype/interfaces/afni/tests/test_auto_TCorrMap.py index d2185e3641..15c98d2aac 100644 --- a/nipype/interfaces/afni/tests/test_auto_TCorrMap.py +++ b/nipype/interfaces/afni/tests/test_auto_TCorrMap.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import TCorrMap + def test_TCorrMap_inputs(): input_map = dict(absolute_threshold=dict(argstr='-Thresh %f %s', name_source='in_file', @@ -106,6 +107,7 @@ def test_TCorrMap_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TCorrMap_outputs(): output_map = dict(absolute_threshold=dict(), average_expr=dict(), @@ -126,4 +128,3 @@ def test_TCorrMap_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_TCorrelate.py b/nipype/interfaces/afni/tests/test_auto_TCorrelate.py index f0b9000213..4a5d68f9e9 100644 --- a/nipype/interfaces/afni/tests/test_auto_TCorrelate.py +++ b/nipype/interfaces/afni/tests/test_auto_TCorrelate.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import TCorrelate + def test_TCorrelate_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -41,6 +42,7 @@ def test_TCorrelate_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TCorrelate_outputs(): output_map = dict(out_file=dict(), ) @@ -49,4 +51,3 @@ def test_TCorrelate_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_TShift.py b/nipype/interfaces/afni/tests/test_auto_TShift.py index b7252feef8..a67893c811 100644 --- a/nipype/interfaces/afni/tests/test_auto_TShift.py +++ b/nipype/interfaces/afni/tests/test_auto_TShift.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import TShift + def test_TShift_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -48,6 +49,7 @@ def test_TShift_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TShift_outputs(): output_map = dict(out_file=dict(), ) @@ -56,4 +58,3 @@ def test_TShift_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_TStat.py b/nipype/interfaces/afni/tests/test_auto_TStat.py index 8a82a42cc6..f7a60ca78c 100644 --- a/nipype/interfaces/afni/tests/test_auto_TStat.py +++ b/nipype/interfaces/afni/tests/test_auto_TStat.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import TStat + def test_TStat_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_TStat_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TStat_outputs(): output_map = dict(out_file=dict(), ) @@ -42,4 +44,3 @@ def test_TStat_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_To3D.py b/nipype/interfaces/afni/tests/test_auto_To3D.py index 7e47b9c9e4..4357ee96da 100644 --- a/nipype/interfaces/afni/tests/test_auto_To3D.py +++ b/nipype/interfaces/afni/tests/test_auto_To3D.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import To3D + def test_To3D_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -39,6 +40,7 @@ def test_To3D_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_To3D_outputs(): output_map = dict(out_file=dict(), ) @@ -47,4 +49,3 @@ def test_To3D_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Volreg.py b/nipype/interfaces/afni/tests/test_auto_Volreg.py index 784715dc32..f97afe6366 100644 --- a/nipype/interfaces/afni/tests/test_auto_Volreg.py +++ b/nipype/interfaces/afni/tests/test_auto_Volreg.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Volreg + def test_Volreg_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -58,6 +59,7 @@ def test_Volreg_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Volreg_outputs(): output_map = dict(md1d_file=dict(), oned_file=dict(), @@ -69,4 +71,3 @@ def test_Volreg_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_Warp.py b/nipype/interfaces/afni/tests/test_auto_Warp.py index 4d7ba9ec22..c749d7fade 100644 --- a/nipype/interfaces/afni/tests/test_auto_Warp.py +++ b/nipype/interfaces/afni/tests/test_auto_Warp.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Warp + def test_Warp_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -46,6 +47,7 @@ def test_Warp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Warp_outputs(): output_map = dict(out_file=dict(), ) @@ -54,4 +56,3 @@ def test_Warp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/afni/tests/test_auto_ZCutUp.py b/nipype/interfaces/afni/tests/test_auto_ZCutUp.py index 998bfe3d97..f3ede54b3e 100644 --- a/nipype/interfaces/afni/tests/test_auto_ZCutUp.py +++ b/nipype/interfaces/afni/tests/test_auto_ZCutUp.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import ZCutUp + def test_ZCutUp_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_ZCutUp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ZCutUp_outputs(): output_map = dict(out_file=dict(), ) @@ -40,4 +42,3 @@ def test_ZCutUp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_ANTS.py b/nipype/interfaces/ants/tests/test_auto_ANTS.py index 955170b803..36f153c532 100644 --- a/nipype/interfaces/ants/tests/test_auto_ANTS.py +++ b/nipype/interfaces/ants/tests/test_auto_ANTS.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..registration import ANTS + def test_ANTS_inputs(): input_map = dict(affine_gradient_descent_option=dict(argstr='%s', ), @@ -79,6 +80,7 @@ def test_ANTS_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ANTS_outputs(): output_map = dict(affine_transform=dict(), inverse_warp_transform=dict(), @@ -91,4 +93,3 @@ def test_ANTS_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_ANTSCommand.py b/nipype/interfaces/ants/tests/test_auto_ANTSCommand.py index 8db8ffd534..1c2a67f3bb 100644 --- a/nipype/interfaces/ants/tests/test_auto_ANTSCommand.py +++ b/nipype/interfaces/ants/tests/test_auto_ANTSCommand.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..base import ANTSCommand + def test_ANTSCommand_inputs(): input_map = dict(args=dict(argstr='%s', ), diff --git a/nipype/interfaces/ants/tests/test_auto_ApplyTransforms.py b/nipype/interfaces/ants/tests/test_auto_ApplyTransforms.py index a20be833ea..b8c71173fe 100644 --- a/nipype/interfaces/ants/tests/test_auto_ApplyTransforms.py +++ b/nipype/interfaces/ants/tests/test_auto_ApplyTransforms.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..resampling import ApplyTransforms + def test_ApplyTransforms_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -51,6 +52,7 @@ def test_ApplyTransforms_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ApplyTransforms_outputs(): output_map = dict(output_image=dict(), ) @@ -59,4 +61,3 @@ def test_ApplyTransforms_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_ApplyTransformsToPoints.py b/nipype/interfaces/ants/tests/test_auto_ApplyTransformsToPoints.py index 42011a59e2..3c6be3669a 100644 --- a/nipype/interfaces/ants/tests/test_auto_ApplyTransformsToPoints.py +++ b/nipype/interfaces/ants/tests/test_auto_ApplyTransformsToPoints.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..resampling import ApplyTransformsToPoints + def test_ApplyTransformsToPoints_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -37,6 +38,7 @@ def test_ApplyTransformsToPoints_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ApplyTransformsToPoints_outputs(): output_map = dict(output_file=dict(), ) @@ -45,4 +47,3 @@ def test_ApplyTransformsToPoints_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_Atropos.py b/nipype/interfaces/ants/tests/test_auto_Atropos.py index b4672972b1..102d91b911 100644 --- a/nipype/interfaces/ants/tests/test_auto_Atropos.py +++ b/nipype/interfaces/ants/tests/test_auto_Atropos.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..segmentation import Atropos + def test_Atropos_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -67,6 +68,7 @@ def test_Atropos_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Atropos_outputs(): output_map = dict(classified_image=dict(), posteriors=dict(), @@ -76,4 +78,3 @@ def test_Atropos_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_AverageAffineTransform.py b/nipype/interfaces/ants/tests/test_auto_AverageAffineTransform.py index df53cfe25e..347b07ef6e 100644 --- a/nipype/interfaces/ants/tests/test_auto_AverageAffineTransform.py +++ b/nipype/interfaces/ants/tests/test_auto_AverageAffineTransform.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import AverageAffineTransform + def test_AverageAffineTransform_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -36,6 +37,7 @@ def test_AverageAffineTransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_AverageAffineTransform_outputs(): output_map = dict(affine_transform=dict(), ) @@ -44,4 +46,3 @@ def test_AverageAffineTransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_AverageImages.py b/nipype/interfaces/ants/tests/test_auto_AverageImages.py index 370b4967dc..2e25305f3a 100644 --- a/nipype/interfaces/ants/tests/test_auto_AverageImages.py +++ b/nipype/interfaces/ants/tests/test_auto_AverageImages.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import AverageImages + def test_AverageImages_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_AverageImages_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_AverageImages_outputs(): output_map = dict(output_average_image=dict(), ) @@ -48,4 +50,3 @@ def test_AverageImages_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_ConvertScalarImageToRGB.py b/nipype/interfaces/ants/tests/test_auto_ConvertScalarImageToRGB.py index 82638eb74a..cc2dfada40 100644 --- a/nipype/interfaces/ants/tests/test_auto_ConvertScalarImageToRGB.py +++ b/nipype/interfaces/ants/tests/test_auto_ConvertScalarImageToRGB.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..visualization import ConvertScalarImageToRGB + def test_ConvertScalarImageToRGB_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -65,6 +66,7 @@ def test_ConvertScalarImageToRGB_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ConvertScalarImageToRGB_outputs(): output_map = dict(output_image=dict(), ) @@ -73,4 +75,3 @@ def test_ConvertScalarImageToRGB_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_CreateTiledMosaic.py b/nipype/interfaces/ants/tests/test_auto_CreateTiledMosaic.py index 079043e4b3..a5222ef3de 100644 --- a/nipype/interfaces/ants/tests/test_auto_CreateTiledMosaic.py +++ b/nipype/interfaces/ants/tests/test_auto_CreateTiledMosaic.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..visualization import CreateTiledMosaic + def test_CreateTiledMosaic_inputs(): input_map = dict(alpha_value=dict(argstr='-a %.2f', ), @@ -48,6 +49,7 @@ def test_CreateTiledMosaic_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CreateTiledMosaic_outputs(): output_map = dict(output_image=dict(), ) @@ -56,4 +58,3 @@ def test_CreateTiledMosaic_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_GenWarpFields.py b/nipype/interfaces/ants/tests/test_auto_GenWarpFields.py index 6005f18db4..a6a3e5c6a7 100644 --- a/nipype/interfaces/ants/tests/test_auto_GenWarpFields.py +++ b/nipype/interfaces/ants/tests/test_auto_GenWarpFields.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..legacy import GenWarpFields + def test_GenWarpFields_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -54,6 +55,7 @@ def test_GenWarpFields_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GenWarpFields_outputs(): output_map = dict(affine_transformation=dict(), input_file=dict(), @@ -66,4 +68,3 @@ def test_GenWarpFields_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_JacobianDeterminant.py b/nipype/interfaces/ants/tests/test_auto_JacobianDeterminant.py index dbba4dd31f..c83a95a5f9 100644 --- a/nipype/interfaces/ants/tests/test_auto_JacobianDeterminant.py +++ b/nipype/interfaces/ants/tests/test_auto_JacobianDeterminant.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import JacobianDeterminant + def test_JacobianDeterminant_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -50,6 +51,7 @@ def test_JacobianDeterminant_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JacobianDeterminant_outputs(): output_map = dict(jacobian_image=dict(), ) @@ -58,4 +60,3 @@ def test_JacobianDeterminant_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_JointFusion.py b/nipype/interfaces/ants/tests/test_auto_JointFusion.py index c354c3eefc..76d8d46969 100644 --- a/nipype/interfaces/ants/tests/test_auto_JointFusion.py +++ b/nipype/interfaces/ants/tests/test_auto_JointFusion.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..segmentation import JointFusion + def test_JointFusion_inputs(): input_map = dict(alpha=dict(requires=['method'], usedefault=True, @@ -70,6 +71,7 @@ def test_JointFusion_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JointFusion_outputs(): output_map = dict(output_label_image=dict(), ) @@ -78,4 +80,3 @@ def test_JointFusion_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_LaplacianThickness.py b/nipype/interfaces/ants/tests/test_auto_LaplacianThickness.py index fbfce8e0e6..60cfb494e3 100644 --- a/nipype/interfaces/ants/tests/test_auto_LaplacianThickness.py +++ b/nipype/interfaces/ants/tests/test_auto_LaplacianThickness.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..segmentation import LaplacianThickness + def test_LaplacianThickness_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -53,6 +54,7 @@ def test_LaplacianThickness_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_LaplacianThickness_outputs(): output_map = dict(output_image=dict(), ) @@ -61,4 +63,3 @@ def test_LaplacianThickness_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_MultiplyImages.py b/nipype/interfaces/ants/tests/test_auto_MultiplyImages.py index 951a277deb..5a3d682551 100644 --- a/nipype/interfaces/ants/tests/test_auto_MultiplyImages.py +++ b/nipype/interfaces/ants/tests/test_auto_MultiplyImages.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import MultiplyImages + def test_MultiplyImages_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_MultiplyImages_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MultiplyImages_outputs(): output_map = dict(output_product_image=dict(), ) @@ -48,4 +50,3 @@ def test_MultiplyImages_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_N4BiasFieldCorrection.py b/nipype/interfaces/ants/tests/test_auto_N4BiasFieldCorrection.py index 4c7ba99e02..18921d811c 100644 --- a/nipype/interfaces/ants/tests/test_auto_N4BiasFieldCorrection.py +++ b/nipype/interfaces/ants/tests/test_auto_N4BiasFieldCorrection.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..segmentation import N4BiasFieldCorrection + def test_N4BiasFieldCorrection_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -53,6 +54,7 @@ def test_N4BiasFieldCorrection_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_N4BiasFieldCorrection_outputs(): output_map = dict(bias_image=dict(), output_image=dict(), @@ -62,4 +64,3 @@ def test_N4BiasFieldCorrection_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_Registration.py b/nipype/interfaces/ants/tests/test_auto_Registration.py index 0880425c0e..cad7938b7b 100644 --- a/nipype/interfaces/ants/tests/test_auto_Registration.py +++ b/nipype/interfaces/ants/tests/test_auto_Registration.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..registration import Registration + def test_Registration_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -122,6 +123,7 @@ def test_Registration_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Registration_outputs(): output_map = dict(composite_transform=dict(), forward_invert_flags=dict(), @@ -138,4 +140,3 @@ def test_Registration_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_WarpImageMultiTransform.py b/nipype/interfaces/ants/tests/test_auto_WarpImageMultiTransform.py index 0c04deea33..09770d9d0f 100644 --- a/nipype/interfaces/ants/tests/test_auto_WarpImageMultiTransform.py +++ b/nipype/interfaces/ants/tests/test_auto_WarpImageMultiTransform.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..resampling import WarpImageMultiTransform + def test_WarpImageMultiTransform_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -58,6 +59,7 @@ def test_WarpImageMultiTransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_WarpImageMultiTransform_outputs(): output_map = dict(output_image=dict(), ) @@ -66,4 +68,3 @@ def test_WarpImageMultiTransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_WarpTimeSeriesImageMultiTransform.py b/nipype/interfaces/ants/tests/test_auto_WarpTimeSeriesImageMultiTransform.py index 7b741cd5c0..0e46ce34a5 100644 --- a/nipype/interfaces/ants/tests/test_auto_WarpTimeSeriesImageMultiTransform.py +++ b/nipype/interfaces/ants/tests/test_auto_WarpTimeSeriesImageMultiTransform.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..resampling import WarpTimeSeriesImageMultiTransform + def test_WarpTimeSeriesImageMultiTransform_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -51,6 +52,7 @@ def test_WarpTimeSeriesImageMultiTransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_WarpTimeSeriesImageMultiTransform_outputs(): output_map = dict(output_image=dict(), ) @@ -59,4 +61,3 @@ def test_WarpTimeSeriesImageMultiTransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_antsBrainExtraction.py b/nipype/interfaces/ants/tests/test_auto_antsBrainExtraction.py index 66588a35a4..5661eddd02 100644 --- a/nipype/interfaces/ants/tests/test_auto_antsBrainExtraction.py +++ b/nipype/interfaces/ants/tests/test_auto_antsBrainExtraction.py @@ -1,6 +1,6 @@ # AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT -from nipype.testing import assert_equal -from nipype.interfaces.ants.segmentation import antsBrainExtraction +from ....testing import assert_equal +from ..segmentation import antsBrainExtraction def test_antsBrainExtraction_inputs(): @@ -34,6 +34,9 @@ def test_antsBrainExtraction_inputs(): ), keep_temporary_files=dict(argstr='-k %d', ), + num_threads=dict(nohash=True, + usedefault=True, + ), out_prefix=dict(argstr='-o %s', usedefault=True, ), @@ -46,17 +49,17 @@ def test_antsBrainExtraction_inputs(): ) inputs = antsBrainExtraction.input_spec() - for key, metadata in input_map.items(): - for metakey, value in metadata.items(): + for key, metadata in list(input_map.items()): + for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value def test_antsBrainExtraction_outputs(): - output_map = dict(BrainExtractionMask=dict(), - BrainExtractionBrain=dict(), + output_map = dict(BrainExtractionBrain=dict(), + BrainExtractionMask=dict(), ) outputs = antsBrainExtraction.output_spec() - for key, metadata in output_map.items(): - for metakey, value in metadata.items(): + for key, metadata in list(output_map.items()): + for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value diff --git a/nipype/interfaces/ants/tests/test_auto_antsCorticalThickness.py b/nipype/interfaces/ants/tests/test_auto_antsCorticalThickness.py index d51d52e011..0944ebf1b7 100644 --- a/nipype/interfaces/ants/tests/test_auto_antsCorticalThickness.py +++ b/nipype/interfaces/ants/tests/test_auto_antsCorticalThickness.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..segmentation import antsCorticalThickness + def test_antsCorticalThickness_inputs(): input_map = dict(anatomical_image=dict(argstr='-a %s', mandatory=True, @@ -73,6 +74,7 @@ def test_antsCorticalThickness_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_antsCorticalThickness_outputs(): output_map = dict(BrainExtractionMask=dict(), BrainSegmentation=dict(), @@ -92,4 +94,3 @@ def test_antsCorticalThickness_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_antsIntroduction.py b/nipype/interfaces/ants/tests/test_auto_antsIntroduction.py index dcd08203b6..be61025e30 100644 --- a/nipype/interfaces/ants/tests/test_auto_antsIntroduction.py +++ b/nipype/interfaces/ants/tests/test_auto_antsIntroduction.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..legacy import antsIntroduction + def test_antsIntroduction_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -54,6 +55,7 @@ def test_antsIntroduction_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_antsIntroduction_outputs(): output_map = dict(affine_transformation=dict(), input_file=dict(), @@ -66,4 +68,3 @@ def test_antsIntroduction_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/ants/tests/test_auto_buildtemplateparallel.py b/nipype/interfaces/ants/tests/test_auto_buildtemplateparallel.py index c75c9ca133..6992ce5c11 100644 --- a/nipype/interfaces/ants/tests/test_auto_buildtemplateparallel.py +++ b/nipype/interfaces/ants/tests/test_auto_buildtemplateparallel.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..legacy import buildtemplateparallel + def test_buildtemplateparallel_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -58,6 +59,7 @@ def test_buildtemplateparallel_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_buildtemplateparallel_outputs(): output_map = dict(final_template_file=dict(), subject_outfiles=dict(), @@ -68,4 +70,3 @@ def test_buildtemplateparallel_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_AnalyzeHeader.py b/nipype/interfaces/camino/tests/test_auto_AnalyzeHeader.py index bfe53e3624..324fe35d1b 100644 --- a/nipype/interfaces/camino/tests/test_auto_AnalyzeHeader.py +++ b/nipype/interfaces/camino/tests/test_auto_AnalyzeHeader.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import AnalyzeHeader + def test_AnalyzeHeader_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -85,6 +86,7 @@ def test_AnalyzeHeader_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_AnalyzeHeader_outputs(): output_map = dict(header=dict(), ) @@ -93,4 +95,3 @@ def test_AnalyzeHeader_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_ComputeEigensystem.py b/nipype/interfaces/camino/tests/test_auto_ComputeEigensystem.py index 37a744a05c..d62e37c212 100644 --- a/nipype/interfaces/camino/tests/test_auto_ComputeEigensystem.py +++ b/nipype/interfaces/camino/tests/test_auto_ComputeEigensystem.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import ComputeEigensystem + def test_ComputeEigensystem_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -38,6 +39,7 @@ def test_ComputeEigensystem_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ComputeEigensystem_outputs(): output_map = dict(eigen=dict(), ) @@ -46,4 +48,3 @@ def test_ComputeEigensystem_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_ComputeFractionalAnisotropy.py b/nipype/interfaces/camino/tests/test_auto_ComputeFractionalAnisotropy.py index 3727068e2b..0a022eb1c3 100644 --- a/nipype/interfaces/camino/tests/test_auto_ComputeFractionalAnisotropy.py +++ b/nipype/interfaces/camino/tests/test_auto_ComputeFractionalAnisotropy.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import ComputeFractionalAnisotropy + def test_ComputeFractionalAnisotropy_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -37,6 +38,7 @@ def test_ComputeFractionalAnisotropy_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ComputeFractionalAnisotropy_outputs(): output_map = dict(fa=dict(), ) @@ -45,4 +47,3 @@ def test_ComputeFractionalAnisotropy_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_ComputeMeanDiffusivity.py b/nipype/interfaces/camino/tests/test_auto_ComputeMeanDiffusivity.py index 690f014b99..213ff038fc 100644 --- a/nipype/interfaces/camino/tests/test_auto_ComputeMeanDiffusivity.py +++ b/nipype/interfaces/camino/tests/test_auto_ComputeMeanDiffusivity.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import ComputeMeanDiffusivity + def test_ComputeMeanDiffusivity_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -37,6 +38,7 @@ def test_ComputeMeanDiffusivity_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ComputeMeanDiffusivity_outputs(): output_map = dict(md=dict(), ) @@ -45,4 +47,3 @@ def test_ComputeMeanDiffusivity_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_ComputeTensorTrace.py b/nipype/interfaces/camino/tests/test_auto_ComputeTensorTrace.py index 58a1479d24..b7d7561cdb 100644 --- a/nipype/interfaces/camino/tests/test_auto_ComputeTensorTrace.py +++ b/nipype/interfaces/camino/tests/test_auto_ComputeTensorTrace.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import ComputeTensorTrace + def test_ComputeTensorTrace_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -37,6 +38,7 @@ def test_ComputeTensorTrace_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ComputeTensorTrace_outputs(): output_map = dict(trace=dict(), ) @@ -45,4 +47,3 @@ def test_ComputeTensorTrace_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_Conmat.py b/nipype/interfaces/camino/tests/test_auto_Conmat.py index 5839e02b76..c5aa705c6c 100644 --- a/nipype/interfaces/camino/tests/test_auto_Conmat.py +++ b/nipype/interfaces/camino/tests/test_auto_Conmat.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..connectivity import Conmat + def test_Conmat_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -43,6 +44,7 @@ def test_Conmat_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Conmat_outputs(): output_map = dict(conmat_sc=dict(), conmat_ts=dict(), @@ -52,4 +54,3 @@ def test_Conmat_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_DT2NIfTI.py b/nipype/interfaces/camino/tests/test_auto_DT2NIfTI.py index 754201435f..9bc58fecdd 100644 --- a/nipype/interfaces/camino/tests/test_auto_DT2NIfTI.py +++ b/nipype/interfaces/camino/tests/test_auto_DT2NIfTI.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import DT2NIfTI + def test_DT2NIfTI_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_DT2NIfTI_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DT2NIfTI_outputs(): output_map = dict(dt=dict(), exitcode=dict(), @@ -42,4 +44,3 @@ def test_DT2NIfTI_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_DTIFit.py b/nipype/interfaces/camino/tests/test_auto_DTIFit.py index 4d4bb35174..8607d3d7ae 100644 --- a/nipype/interfaces/camino/tests/test_auto_DTIFit.py +++ b/nipype/interfaces/camino/tests/test_auto_DTIFit.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import DTIFit + def test_DTIFit_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -37,6 +38,7 @@ def test_DTIFit_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DTIFit_outputs(): output_map = dict(tensor_fitted=dict(), ) @@ -45,4 +47,3 @@ def test_DTIFit_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_DTLUTGen.py b/nipype/interfaces/camino/tests/test_auto_DTLUTGen.py index 2774a6acab..6cae7fee81 100644 --- a/nipype/interfaces/camino/tests/test_auto_DTLUTGen.py +++ b/nipype/interfaces/camino/tests/test_auto_DTLUTGen.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import DTLUTGen + def test_DTLUTGen_inputs(): input_map = dict(acg=dict(argstr='-acg', ), @@ -57,6 +58,7 @@ def test_DTLUTGen_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DTLUTGen_outputs(): output_map = dict(dtLUT=dict(), ) @@ -65,4 +67,3 @@ def test_DTLUTGen_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_DTMetric.py b/nipype/interfaces/camino/tests/test_auto_DTMetric.py index 45d1029dec..d4cec76afb 100644 --- a/nipype/interfaces/camino/tests/test_auto_DTMetric.py +++ b/nipype/interfaces/camino/tests/test_auto_DTMetric.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import DTMetric + def test_DTMetric_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -37,6 +38,7 @@ def test_DTMetric_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DTMetric_outputs(): output_map = dict(metric_stats=dict(), ) @@ -45,4 +47,3 @@ def test_DTMetric_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_FSL2Scheme.py b/nipype/interfaces/camino/tests/test_auto_FSL2Scheme.py index 81d7e3861e..b182c5a862 100644 --- a/nipype/interfaces/camino/tests/test_auto_FSL2Scheme.py +++ b/nipype/interfaces/camino/tests/test_auto_FSL2Scheme.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import FSL2Scheme + def test_FSL2Scheme_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -51,6 +52,7 @@ def test_FSL2Scheme_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FSL2Scheme_outputs(): output_map = dict(scheme=dict(), ) @@ -59,4 +61,3 @@ def test_FSL2Scheme_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_Image2Voxel.py b/nipype/interfaces/camino/tests/test_auto_Image2Voxel.py index ab862918ef..57da324d6c 100644 --- a/nipype/interfaces/camino/tests/test_auto_Image2Voxel.py +++ b/nipype/interfaces/camino/tests/test_auto_Image2Voxel.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import Image2Voxel + def test_Image2Voxel_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_Image2Voxel_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Image2Voxel_outputs(): output_map = dict(voxel_order=dict(), ) @@ -40,4 +42,3 @@ def test_Image2Voxel_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_ImageStats.py b/nipype/interfaces/camino/tests/test_auto_ImageStats.py index 4c719e5fc2..2fd6293a24 100644 --- a/nipype/interfaces/camino/tests/test_auto_ImageStats.py +++ b/nipype/interfaces/camino/tests/test_auto_ImageStats.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ImageStats + def test_ImageStats_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_ImageStats_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ImageStats_outputs(): output_map = dict(out_file=dict(), ) @@ -42,4 +44,3 @@ def test_ImageStats_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_LinRecon.py b/nipype/interfaces/camino/tests/test_auto_LinRecon.py index 29835c88dd..311bd70fdf 100644 --- a/nipype/interfaces/camino/tests/test_auto_LinRecon.py +++ b/nipype/interfaces/camino/tests/test_auto_LinRecon.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..odf import LinRecon + def test_LinRecon_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -42,6 +43,7 @@ def test_LinRecon_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_LinRecon_outputs(): output_map = dict(recon_data=dict(), ) @@ -50,4 +52,3 @@ def test_LinRecon_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_MESD.py b/nipype/interfaces/camino/tests/test_auto_MESD.py index 41f2468492..018d820a96 100644 --- a/nipype/interfaces/camino/tests/test_auto_MESD.py +++ b/nipype/interfaces/camino/tests/test_auto_MESD.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..odf import MESD + def test_MESD_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -50,6 +51,7 @@ def test_MESD_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MESD_outputs(): output_map = dict(mesd_data=dict(), ) @@ -58,4 +60,3 @@ def test_MESD_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_ModelFit.py b/nipype/interfaces/camino/tests/test_auto_ModelFit.py index 201df1069d..f56a605962 100644 --- a/nipype/interfaces/camino/tests/test_auto_ModelFit.py +++ b/nipype/interfaces/camino/tests/test_auto_ModelFit.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import ModelFit + def test_ModelFit_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -57,6 +58,7 @@ def test_ModelFit_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ModelFit_outputs(): output_map = dict(fitted_data=dict(), ) @@ -65,4 +67,3 @@ def test_ModelFit_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_NIfTIDT2Camino.py b/nipype/interfaces/camino/tests/test_auto_NIfTIDT2Camino.py index 70ca86a7e9..dd710905b2 100644 --- a/nipype/interfaces/camino/tests/test_auto_NIfTIDT2Camino.py +++ b/nipype/interfaces/camino/tests/test_auto_NIfTIDT2Camino.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import NIfTIDT2Camino + def test_NIfTIDT2Camino_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_NIfTIDT2Camino_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_NIfTIDT2Camino_outputs(): output_map = dict(out_file=dict(), ) @@ -48,4 +50,3 @@ def test_NIfTIDT2Camino_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_PicoPDFs.py b/nipype/interfaces/camino/tests/test_auto_PicoPDFs.py index 2a1bfb2dc2..4f4a0b75be 100644 --- a/nipype/interfaces/camino/tests/test_auto_PicoPDFs.py +++ b/nipype/interfaces/camino/tests/test_auto_PicoPDFs.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import PicoPDFs + def test_PicoPDFs_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -47,6 +48,7 @@ def test_PicoPDFs_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_PicoPDFs_outputs(): output_map = dict(pdfs=dict(), ) @@ -55,4 +57,3 @@ def test_PicoPDFs_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_ProcStreamlines.py b/nipype/interfaces/camino/tests/test_auto_ProcStreamlines.py index 9cc7627408..99ecff3624 100644 --- a/nipype/interfaces/camino/tests/test_auto_ProcStreamlines.py +++ b/nipype/interfaces/camino/tests/test_auto_ProcStreamlines.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import ProcStreamlines + def test_ProcStreamlines_inputs(): input_map = dict(allowmultitargets=dict(argstr='-allowmultitargets', ), @@ -105,6 +106,7 @@ def test_ProcStreamlines_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ProcStreamlines_outputs(): output_map = dict(outputroot_files=dict(), proc=dict(), @@ -114,4 +116,3 @@ def test_ProcStreamlines_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_QBallMX.py b/nipype/interfaces/camino/tests/test_auto_QBallMX.py index c6ed4ce435..9a4b2375c8 100644 --- a/nipype/interfaces/camino/tests/test_auto_QBallMX.py +++ b/nipype/interfaces/camino/tests/test_auto_QBallMX.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..odf import QBallMX + def test_QBallMX_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -42,6 +43,7 @@ def test_QBallMX_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_QBallMX_outputs(): output_map = dict(qmat=dict(), ) @@ -50,4 +52,3 @@ def test_QBallMX_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_SFLUTGen.py b/nipype/interfaces/camino/tests/test_auto_SFLUTGen.py index 5bef04c474..6d59c40c3e 100644 --- a/nipype/interfaces/camino/tests/test_auto_SFLUTGen.py +++ b/nipype/interfaces/camino/tests/test_auto_SFLUTGen.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..calib import SFLUTGen + def test_SFLUTGen_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -47,6 +48,7 @@ def test_SFLUTGen_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SFLUTGen_outputs(): output_map = dict(lut_one_fibre=dict(), lut_two_fibres=dict(), @@ -56,4 +58,3 @@ def test_SFLUTGen_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_SFPICOCalibData.py b/nipype/interfaces/camino/tests/test_auto_SFPICOCalibData.py index 6988c53f4c..4adfe50709 100644 --- a/nipype/interfaces/camino/tests/test_auto_SFPICOCalibData.py +++ b/nipype/interfaces/camino/tests/test_auto_SFPICOCalibData.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..calib import SFPICOCalibData + def test_SFPICOCalibData_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -65,6 +66,7 @@ def test_SFPICOCalibData_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SFPICOCalibData_outputs(): output_map = dict(PICOCalib=dict(), calib_info=dict(), @@ -74,4 +76,3 @@ def test_SFPICOCalibData_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_SFPeaks.py b/nipype/interfaces/camino/tests/test_auto_SFPeaks.py index 4f767b3b54..69c85404c1 100644 --- a/nipype/interfaces/camino/tests/test_auto_SFPeaks.py +++ b/nipype/interfaces/camino/tests/test_auto_SFPeaks.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..odf import SFPeaks + def test_SFPeaks_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -61,6 +62,7 @@ def test_SFPeaks_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SFPeaks_outputs(): output_map = dict(peaks=dict(), ) @@ -69,4 +71,3 @@ def test_SFPeaks_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_Shredder.py b/nipype/interfaces/camino/tests/test_auto_Shredder.py index 58482b0795..7f36415c0c 100644 --- a/nipype/interfaces/camino/tests/test_auto_Shredder.py +++ b/nipype/interfaces/camino/tests/test_auto_Shredder.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import Shredder + def test_Shredder_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_Shredder_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Shredder_outputs(): output_map = dict(shredded=dict(), ) @@ -48,4 +50,3 @@ def test_Shredder_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_Track.py b/nipype/interfaces/camino/tests/test_auto_Track.py index e3b14aa85e..a8fd980b79 100644 --- a/nipype/interfaces/camino/tests/test_auto_Track.py +++ b/nipype/interfaces/camino/tests/test_auto_Track.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import Track + def test_Track_inputs(): input_map = dict(anisfile=dict(argstr='-anisfile %s', ), @@ -73,6 +74,7 @@ def test_Track_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Track_outputs(): output_map = dict(tracked=dict(), ) @@ -81,4 +83,3 @@ def test_Track_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_TrackBallStick.py b/nipype/interfaces/camino/tests/test_auto_TrackBallStick.py index 57d7a3e098..1d563f873c 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackBallStick.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackBallStick.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import TrackBallStick + def test_TrackBallStick_inputs(): input_map = dict(anisfile=dict(argstr='-anisfile %s', ), @@ -73,6 +74,7 @@ def test_TrackBallStick_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TrackBallStick_outputs(): output_map = dict(tracked=dict(), ) @@ -81,4 +83,3 @@ def test_TrackBallStick_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_TrackBayesDirac.py b/nipype/interfaces/camino/tests/test_auto_TrackBayesDirac.py index 40a5418c35..f2c2aecede 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackBayesDirac.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackBayesDirac.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import TrackBayesDirac + def test_TrackBayesDirac_inputs(): input_map = dict(anisfile=dict(argstr='-anisfile %s', ), @@ -93,6 +94,7 @@ def test_TrackBayesDirac_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TrackBayesDirac_outputs(): output_map = dict(tracked=dict(), ) @@ -101,4 +103,3 @@ def test_TrackBayesDirac_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_TrackBedpostxDeter.py b/nipype/interfaces/camino/tests/test_auto_TrackBedpostxDeter.py index 0e44d68310..9f9e40d284 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackBedpostxDeter.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackBedpostxDeter.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import TrackBedpostxDeter + def test_TrackBedpostxDeter_inputs(): input_map = dict(anisfile=dict(argstr='-anisfile %s', ), @@ -79,6 +80,7 @@ def test_TrackBedpostxDeter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TrackBedpostxDeter_outputs(): output_map = dict(tracked=dict(), ) @@ -87,4 +89,3 @@ def test_TrackBedpostxDeter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_TrackBedpostxProba.py b/nipype/interfaces/camino/tests/test_auto_TrackBedpostxProba.py index 2fe581ec1e..40f01d1b37 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackBedpostxProba.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackBedpostxProba.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import TrackBedpostxProba + def test_TrackBedpostxProba_inputs(): input_map = dict(anisfile=dict(argstr='-anisfile %s', ), @@ -82,6 +83,7 @@ def test_TrackBedpostxProba_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TrackBedpostxProba_outputs(): output_map = dict(tracked=dict(), ) @@ -90,4 +92,3 @@ def test_TrackBedpostxProba_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_TrackBootstrap.py b/nipype/interfaces/camino/tests/test_auto_TrackBootstrap.py index aa0af20159..091fa6bd90 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackBootstrap.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackBootstrap.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import TrackBootstrap + def test_TrackBootstrap_inputs(): input_map = dict(anisfile=dict(argstr='-anisfile %s', ), @@ -86,6 +87,7 @@ def test_TrackBootstrap_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TrackBootstrap_outputs(): output_map = dict(tracked=dict(), ) @@ -94,4 +96,3 @@ def test_TrackBootstrap_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_TrackDT.py b/nipype/interfaces/camino/tests/test_auto_TrackDT.py index 4b04104ec6..0376ff7d55 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackDT.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackDT.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import TrackDT + def test_TrackDT_inputs(): input_map = dict(anisfile=dict(argstr='-anisfile %s', ), @@ -73,6 +74,7 @@ def test_TrackDT_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TrackDT_outputs(): output_map = dict(tracked=dict(), ) @@ -81,4 +83,3 @@ def test_TrackDT_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_TrackPICo.py b/nipype/interfaces/camino/tests/test_auto_TrackPICo.py index 374e04bb36..c95a7e8812 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackPICo.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackPICo.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import TrackPICo + def test_TrackPICo_inputs(): input_map = dict(anisfile=dict(argstr='-anisfile %s', ), @@ -78,6 +79,7 @@ def test_TrackPICo_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TrackPICo_outputs(): output_map = dict(tracked=dict(), ) @@ -86,4 +88,3 @@ def test_TrackPICo_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_TractShredder.py b/nipype/interfaces/camino/tests/test_auto_TractShredder.py index e129b51363..d18ec2e9ca 100644 --- a/nipype/interfaces/camino/tests/test_auto_TractShredder.py +++ b/nipype/interfaces/camino/tests/test_auto_TractShredder.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import TractShredder + def test_TractShredder_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_TractShredder_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TractShredder_outputs(): output_map = dict(shredded=dict(), ) @@ -48,4 +50,3 @@ def test_TractShredder_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino/tests/test_auto_VtkStreamlines.py b/nipype/interfaces/camino/tests/test_auto_VtkStreamlines.py index 6ebcae1985..805f4709cb 100644 --- a/nipype/interfaces/camino/tests/test_auto_VtkStreamlines.py +++ b/nipype/interfaces/camino/tests/test_auto_VtkStreamlines.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import VtkStreamlines + def test_VtkStreamlines_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -50,6 +51,7 @@ def test_VtkStreamlines_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_VtkStreamlines_outputs(): output_map = dict(vtk=dict(), ) @@ -58,4 +60,3 @@ def test_VtkStreamlines_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino2trackvis/tests/test_auto_Camino2Trackvis.py b/nipype/interfaces/camino2trackvis/tests/test_auto_Camino2Trackvis.py index 8a0e0590cf..4feaae6bf3 100644 --- a/nipype/interfaces/camino2trackvis/tests/test_auto_Camino2Trackvis.py +++ b/nipype/interfaces/camino2trackvis/tests/test_auto_Camino2Trackvis.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import Camino2Trackvis + def test_Camino2Trackvis_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -49,6 +50,7 @@ def test_Camino2Trackvis_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Camino2Trackvis_outputs(): output_map = dict(trackvis=dict(), ) @@ -57,4 +59,3 @@ def test_Camino2Trackvis_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/camino2trackvis/tests/test_auto_Trackvis2Camino.py b/nipype/interfaces/camino2trackvis/tests/test_auto_Trackvis2Camino.py index 7ebf190c39..fe24f0f99b 100644 --- a/nipype/interfaces/camino2trackvis/tests/test_auto_Trackvis2Camino.py +++ b/nipype/interfaces/camino2trackvis/tests/test_auto_Trackvis2Camino.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import Trackvis2Camino + def test_Trackvis2Camino_inputs(): input_map = dict(append_file=dict(argstr='-a %s', position=2, @@ -31,6 +32,7 @@ def test_Trackvis2Camino_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Trackvis2Camino_outputs(): output_map = dict(camino=dict(), ) @@ -39,4 +41,3 @@ def test_Trackvis2Camino_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/cmtk/tests/test_auto_AverageNetworks.py b/nipype/interfaces/cmtk/tests/test_auto_AverageNetworks.py index b150dff97c..e4d649585e 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_AverageNetworks.py +++ b/nipype/interfaces/cmtk/tests/test_auto_AverageNetworks.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..nx import AverageNetworks + def test_AverageNetworks_inputs(): input_map = dict(group_id=dict(usedefault=True, ), @@ -20,6 +21,7 @@ def test_AverageNetworks_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_AverageNetworks_outputs(): output_map = dict(gexf_groupavg=dict(), gpickled_groupavg=dict(), @@ -30,4 +32,3 @@ def test_AverageNetworks_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/cmtk/tests/test_auto_CFFConverter.py b/nipype/interfaces/cmtk/tests/test_auto_CFFConverter.py index 395c2ee38f..261a0babaa 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_CFFConverter.py +++ b/nipype/interfaces/cmtk/tests/test_auto_CFFConverter.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import CFFConverter + def test_CFFConverter_inputs(): input_map = dict(creator=dict(), data_files=dict(), @@ -36,6 +37,7 @@ def test_CFFConverter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CFFConverter_outputs(): output_map = dict(connectome_file=dict(), ) @@ -44,4 +46,3 @@ def test_CFFConverter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/cmtk/tests/test_auto_CreateMatrix.py b/nipype/interfaces/cmtk/tests/test_auto_CreateMatrix.py index 7da385220c..c986c02c7b 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_CreateMatrix.py +++ b/nipype/interfaces/cmtk/tests/test_auto_CreateMatrix.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..cmtk import CreateMatrix + def test_CreateMatrix_inputs(): input_map = dict(count_region_intersections=dict(usedefault=True, ), @@ -32,6 +33,7 @@ def test_CreateMatrix_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CreateMatrix_outputs(): output_map = dict(endpoint_file=dict(), endpoint_file_mm=dict(), @@ -57,4 +59,3 @@ def test_CreateMatrix_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/cmtk/tests/test_auto_CreateNodes.py b/nipype/interfaces/cmtk/tests/test_auto_CreateNodes.py index 84f3e38ad3..c5d9fe4163 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_CreateNodes.py +++ b/nipype/interfaces/cmtk/tests/test_auto_CreateNodes.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..cmtk import CreateNodes + def test_CreateNodes_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -19,6 +20,7 @@ def test_CreateNodes_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CreateNodes_outputs(): output_map = dict(node_network=dict(), ) @@ -27,4 +29,3 @@ def test_CreateNodes_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/cmtk/tests/test_auto_MergeCNetworks.py b/nipype/interfaces/cmtk/tests/test_auto_MergeCNetworks.py index a7e7fe169b..73654ced71 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_MergeCNetworks.py +++ b/nipype/interfaces/cmtk/tests/test_auto_MergeCNetworks.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import MergeCNetworks + def test_MergeCNetworks_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -17,6 +18,7 @@ def test_MergeCNetworks_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MergeCNetworks_outputs(): output_map = dict(connectome_file=dict(), ) @@ -25,4 +27,3 @@ def test_MergeCNetworks_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/cmtk/tests/test_auto_NetworkBasedStatistic.py b/nipype/interfaces/cmtk/tests/test_auto_NetworkBasedStatistic.py index 3a038ae6c9..70857e1b98 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_NetworkBasedStatistic.py +++ b/nipype/interfaces/cmtk/tests/test_auto_NetworkBasedStatistic.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..nbs import NetworkBasedStatistic + def test_NetworkBasedStatistic_inputs(): input_map = dict(edge_key=dict(usedefault=True, ), @@ -28,6 +29,7 @@ def test_NetworkBasedStatistic_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_NetworkBasedStatistic_outputs(): output_map = dict(nbs_network=dict(), nbs_pval_network=dict(), @@ -38,4 +40,3 @@ def test_NetworkBasedStatistic_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/cmtk/tests/test_auto_NetworkXMetrics.py b/nipype/interfaces/cmtk/tests/test_auto_NetworkXMetrics.py index eb596fa650..e26c389974 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_NetworkXMetrics.py +++ b/nipype/interfaces/cmtk/tests/test_auto_NetworkXMetrics.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..nx import NetworkXMetrics + def test_NetworkXMetrics_inputs(): input_map = dict(compute_clique_related_measures=dict(usedefault=True, ), @@ -33,6 +34,7 @@ def test_NetworkXMetrics_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_NetworkXMetrics_outputs(): output_map = dict(edge_measure_networks=dict(), edge_measures_matlab=dict(), @@ -53,4 +55,3 @@ def test_NetworkXMetrics_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/cmtk/tests/test_auto_Parcellate.py b/nipype/interfaces/cmtk/tests/test_auto_Parcellate.py index d7cde3f392..eff984ea54 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_Parcellate.py +++ b/nipype/interfaces/cmtk/tests/test_auto_Parcellate.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..parcellation import Parcellate + def test_Parcellate_inputs(): input_map = dict(dilation=dict(usedefault=True, ), @@ -23,6 +24,7 @@ def test_Parcellate_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Parcellate_outputs(): output_map = dict(aseg_file=dict(), cc_unknown_file=dict(), @@ -38,4 +40,3 @@ def test_Parcellate_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/cmtk/tests/test_auto_ROIGen.py b/nipype/interfaces/cmtk/tests/test_auto_ROIGen.py index dde9200bd8..2869299324 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_ROIGen.py +++ b/nipype/interfaces/cmtk/tests/test_auto_ROIGen.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..cmtk import ROIGen + def test_ROIGen_inputs(): input_map = dict(LUT_file=dict(xor=['use_freesurfer_LUT'], ), @@ -25,6 +26,7 @@ def test_ROIGen_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ROIGen_outputs(): output_map = dict(dict_file=dict(), roi_file=dict(), @@ -34,4 +36,3 @@ def test_ROIGen_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTIRecon.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTIRecon.py index 591ead36a9..907df7eb13 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTIRecon.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTIRecon.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import DTIRecon + def test_DTIRecon_inputs(): input_map = dict(DWI=dict(argstr='%s', mandatory=True, @@ -44,6 +45,7 @@ def test_DTIRecon_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DTIRecon_outputs(): output_map = dict(ADC=dict(), B0=dict(), @@ -63,4 +65,3 @@ def test_DTIRecon_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTITracker.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTITracker.py index 47f5b85b75..d21a6ecb34 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTITracker.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTITracker.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import DTITracker + def test_DTITracker_inputs(): input_map = dict(angle_threshold=dict(argstr='-at %f', ), @@ -68,6 +69,7 @@ def test_DTITracker_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DTITracker_outputs(): output_map = dict(mask_file=dict(), track_file=dict(), @@ -77,4 +79,3 @@ def test_DTITracker_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_HARDIMat.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_HARDIMat.py index 449ccc0fb6..725bbef73a 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_HARDIMat.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_HARDIMat.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..odf import HARDIMat + def test_HARDIMat_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -42,6 +43,7 @@ def test_HARDIMat_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_HARDIMat_outputs(): output_map = dict(out_file=dict(), ) @@ -50,4 +52,3 @@ def test_HARDIMat_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFRecon.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFRecon.py index f255fe57b5..641fb1ad93 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFRecon.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFRecon.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..odf import ODFRecon + def test_ODFRecon_inputs(): input_map = dict(DWI=dict(argstr='%s', mandatory=True, @@ -59,6 +60,7 @@ def test_ODFRecon_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ODFRecon_outputs(): output_map = dict(B0=dict(), DWI=dict(), @@ -71,4 +73,3 @@ def test_ODFRecon_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFTracker.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFTracker.py index 172d3608a9..ba57c26e02 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFTracker.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFTracker.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..odf import ODFTracker + def test_ODFTracker_inputs(): input_map = dict(ODF=dict(mandatory=True, ), @@ -78,6 +79,7 @@ def test_ODFTracker_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ODFTracker_outputs(): output_map = dict(track_file=dict(), ) @@ -86,4 +88,3 @@ def test_ODFTracker_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_SplineFilter.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_SplineFilter.py index e830e4e345..8079634c80 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_SplineFilter.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_SplineFilter.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..postproc import SplineFilter + def test_SplineFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_SplineFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SplineFilter_outputs(): output_map = dict(smoothed_track_file=dict(), ) @@ -40,4 +42,3 @@ def test_SplineFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_TrackMerge.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_TrackMerge.py index 290f7955b2..5eaa8f1224 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_TrackMerge.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_TrackMerge.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..postproc import TrackMerge + def test_TrackMerge_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -28,6 +29,7 @@ def test_TrackMerge_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TrackMerge_outputs(): output_map = dict(track_file=dict(), ) @@ -36,4 +38,3 @@ def test_TrackMerge_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/dipy/tests/test_auto_DTI.py b/nipype/interfaces/dipy/tests/test_auto_DTI.py index 9a979fa262..0abba84540 100644 --- a/nipype/interfaces/dipy/tests/test_auto_DTI.py +++ b/nipype/interfaces/dipy/tests/test_auto_DTI.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tensors import DTI + def test_DTI_inputs(): input_map = dict(bvals=dict(mandatory=True, ), @@ -19,6 +20,7 @@ def test_DTI_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DTI_outputs(): output_map = dict(out_file=dict(), ) @@ -27,4 +29,3 @@ def test_DTI_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/dipy/tests/test_auto_Denoise.py b/nipype/interfaces/dipy/tests/test_auto_Denoise.py index 4383e1029b..dad60ccb5f 100644 --- a/nipype/interfaces/dipy/tests/test_auto_Denoise.py +++ b/nipype/interfaces/dipy/tests/test_auto_Denoise.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Denoise + def test_Denoise_inputs(): input_map = dict(block_radius=dict(), in_file=dict(mandatory=True, @@ -19,6 +20,7 @@ def test_Denoise_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Denoise_outputs(): output_map = dict(out_file=dict(), ) @@ -27,4 +29,3 @@ def test_Denoise_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/dipy/tests/test_auto_Resample.py b/nipype/interfaces/dipy/tests/test_auto_Resample.py index 9b5636ca80..06c462dd2d 100644 --- a/nipype/interfaces/dipy/tests/test_auto_Resample.py +++ b/nipype/interfaces/dipy/tests/test_auto_Resample.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Resample + def test_Resample_inputs(): input_map = dict(in_file=dict(mandatory=True, ), @@ -16,6 +17,7 @@ def test_Resample_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Resample_outputs(): output_map = dict(out_file=dict(), ) @@ -24,4 +26,3 @@ def test_Resample_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/dipy/tests/test_auto_SimulateMultiTensor.py b/nipype/interfaces/dipy/tests/test_auto_SimulateMultiTensor.py index 88c3f20bcd..5bc7a2928f 100644 --- a/nipype/interfaces/dipy/tests/test_auto_SimulateMultiTensor.py +++ b/nipype/interfaces/dipy/tests/test_auto_SimulateMultiTensor.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..simulate import SimulateMultiTensor + def test_SimulateMultiTensor_inputs(): input_map = dict(baseline=dict(mandatory=True, ), @@ -45,6 +46,7 @@ def test_SimulateMultiTensor_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SimulateMultiTensor_outputs(): output_map = dict(out_bval=dict(), out_bvec=dict(), @@ -56,4 +58,3 @@ def test_SimulateMultiTensor_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/dipy/tests/test_auto_TensorMode.py b/nipype/interfaces/dipy/tests/test_auto_TensorMode.py index aca8f63751..dc2f0a06ff 100644 --- a/nipype/interfaces/dipy/tests/test_auto_TensorMode.py +++ b/nipype/interfaces/dipy/tests/test_auto_TensorMode.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tensors import TensorMode + def test_TensorMode_inputs(): input_map = dict(bvals=dict(mandatory=True, ), @@ -19,6 +20,7 @@ def test_TensorMode_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TensorMode_outputs(): output_map = dict(out_file=dict(), ) @@ -27,4 +29,3 @@ def test_TensorMode_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/dipy/tests/test_auto_TrackDensityMap.py b/nipype/interfaces/dipy/tests/test_auto_TrackDensityMap.py index c4f926ac8a..5c2e2d0b8d 100644 --- a/nipype/interfaces/dipy/tests/test_auto_TrackDensityMap.py +++ b/nipype/interfaces/dipy/tests/test_auto_TrackDensityMap.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tracks import TrackDensityMap + def test_TrackDensityMap_inputs(): input_map = dict(data_dims=dict(), in_file=dict(mandatory=True, @@ -19,6 +20,7 @@ def test_TrackDensityMap_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TrackDensityMap_outputs(): output_map = dict(out_file=dict(), ) @@ -27,4 +29,3 @@ def test_TrackDensityMap_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/elastix/tests/test_auto_AnalyzeWarp.py b/nipype/interfaces/elastix/tests/test_auto_AnalyzeWarp.py index 0f992772cf..a298b4ade6 100644 --- a/nipype/interfaces/elastix/tests/test_auto_AnalyzeWarp.py +++ b/nipype/interfaces/elastix/tests/test_auto_AnalyzeWarp.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..registration import AnalyzeWarp + def test_AnalyzeWarp_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -30,6 +31,7 @@ def test_AnalyzeWarp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_AnalyzeWarp_outputs(): output_map = dict(disp_field=dict(), jacdet_map=dict(), @@ -40,4 +42,3 @@ def test_AnalyzeWarp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/elastix/tests/test_auto_ApplyWarp.py b/nipype/interfaces/elastix/tests/test_auto_ApplyWarp.py index a367c647e5..1d6addb92a 100644 --- a/nipype/interfaces/elastix/tests/test_auto_ApplyWarp.py +++ b/nipype/interfaces/elastix/tests/test_auto_ApplyWarp.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..registration import ApplyWarp + def test_ApplyWarp_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_ApplyWarp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ApplyWarp_outputs(): output_map = dict(warped_file=dict(), ) @@ -41,4 +43,3 @@ def test_ApplyWarp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/elastix/tests/test_auto_EditTransform.py b/nipype/interfaces/elastix/tests/test_auto_EditTransform.py index 794977331c..9b5c082299 100644 --- a/nipype/interfaces/elastix/tests/test_auto_EditTransform.py +++ b/nipype/interfaces/elastix/tests/test_auto_EditTransform.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import EditTransform + def test_EditTransform_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -24,6 +25,7 @@ def test_EditTransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_EditTransform_outputs(): output_map = dict(output_file=dict(), ) @@ -32,4 +34,3 @@ def test_EditTransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/elastix/tests/test_auto_PointsWarp.py b/nipype/interfaces/elastix/tests/test_auto_PointsWarp.py index 9084016d2e..de12ae5698 100644 --- a/nipype/interfaces/elastix/tests/test_auto_PointsWarp.py +++ b/nipype/interfaces/elastix/tests/test_auto_PointsWarp.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..registration import PointsWarp + def test_PointsWarp_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_PointsWarp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_PointsWarp_outputs(): output_map = dict(warped_file=dict(), ) @@ -41,4 +43,3 @@ def test_PointsWarp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/elastix/tests/test_auto_Registration.py b/nipype/interfaces/elastix/tests/test_auto_Registration.py index 74450da13b..4bbe547488 100644 --- a/nipype/interfaces/elastix/tests/test_auto_Registration.py +++ b/nipype/interfaces/elastix/tests/test_auto_Registration.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..registration import Registration + def test_Registration_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -42,6 +43,7 @@ def test_Registration_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Registration_outputs(): output_map = dict(transform=dict(), warped_file=dict(), @@ -53,4 +55,3 @@ def test_Registration_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ApplyMask.py b/nipype/interfaces/freesurfer/tests/test_auto_ApplyMask.py index 76d3afa4f1..23bff662ce 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ApplyMask.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ApplyMask.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ApplyMask + def test_ApplyMask_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -45,6 +46,7 @@ def test_ApplyMask_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ApplyMask_outputs(): output_map = dict(out_file=dict(), ) @@ -53,4 +55,3 @@ def test_ApplyMask_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ApplyVolTransform.py b/nipype/interfaces/freesurfer/tests/test_auto_ApplyVolTransform.py index 414eab974f..0912bc80dd 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ApplyVolTransform.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ApplyVolTransform.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import ApplyVolTransform + def test_ApplyVolTransform_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -77,6 +78,7 @@ def test_ApplyVolTransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ApplyVolTransform_outputs(): output_map = dict(transformed_file=dict(), ) @@ -85,4 +87,3 @@ def test_ApplyVolTransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_BBRegister.py b/nipype/interfaces/freesurfer/tests/test_auto_BBRegister.py index 1336d122f2..cb3444c2f0 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_BBRegister.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_BBRegister.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import BBRegister + def test_BBRegister_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -58,6 +59,7 @@ def test_BBRegister_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BBRegister_outputs(): output_map = dict(min_cost_file=dict(), out_fsl_file=dict(), @@ -69,4 +71,3 @@ def test_BBRegister_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Binarize.py b/nipype/interfaces/freesurfer/tests/test_auto_Binarize.py index a08eed564b..b22d6a98e6 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Binarize.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Binarize.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import Binarize + def test_Binarize_inputs(): input_map = dict(abs=dict(argstr='--abs', ), @@ -79,6 +80,7 @@ def test_Binarize_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Binarize_outputs(): output_map = dict(binary_file=dict(), count_file=dict(), @@ -88,4 +90,3 @@ def test_Binarize_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Concatenate.py b/nipype/interfaces/freesurfer/tests/test_auto_Concatenate.py index 38b5833527..1a5e51758e 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Concatenate.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Concatenate.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import Concatenate + def test_Concatenate_inputs(): input_map = dict(add_val=dict(argstr='--add %f', ), @@ -57,6 +58,7 @@ def test_Concatenate_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Concatenate_outputs(): output_map = dict(concatenated_file=dict(), ) @@ -65,4 +67,3 @@ def test_Concatenate_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_DICOMConvert.py b/nipype/interfaces/freesurfer/tests/test_auto_DICOMConvert.py index 88c63c2abb..1551f3e44c 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_DICOMConvert.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_DICOMConvert.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import DICOMConvert + def test_DICOMConvert_inputs(): input_map = dict(args=dict(argstr='%s', ), diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ExtractMainComponent.py b/nipype/interfaces/freesurfer/tests/test_auto_ExtractMainComponent.py index 9a73f060b3..617a696a2b 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ExtractMainComponent.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ExtractMainComponent.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ExtractMainComponent + def test_ExtractMainComponent_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_ExtractMainComponent_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ExtractMainComponent_outputs(): output_map = dict(out_file=dict(), ) @@ -37,4 +39,3 @@ def test_ExtractMainComponent_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_FSCommand.py b/nipype/interfaces/freesurfer/tests/test_auto_FSCommand.py index 6e44fdbf17..f463310c33 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_FSCommand.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_FSCommand.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..base import FSCommand + def test_FSCommand_inputs(): input_map = dict(args=dict(argstr='%s', ), diff --git a/nipype/interfaces/freesurfer/tests/test_auto_FitMSParams.py b/nipype/interfaces/freesurfer/tests/test_auto_FitMSParams.py index 947f58ebcf..e54c0ddcc7 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_FitMSParams.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_FitMSParams.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import FitMSParams + def test_FitMSParams_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_FitMSParams_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FitMSParams_outputs(): output_map = dict(pd_image=dict(), t1_image=dict(), @@ -43,4 +45,3 @@ def test_FitMSParams_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_GLMFit.py b/nipype/interfaces/freesurfer/tests/test_auto_GLMFit.py index 323e425006..41f09cb1a8 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_GLMFit.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_GLMFit.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import GLMFit + def test_GLMFit_inputs(): input_map = dict(allow_ill_cond=dict(argstr='--illcond', ), @@ -142,6 +143,7 @@ def test_GLMFit_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GLMFit_outputs(): output_map = dict(beta_file=dict(), dof_file=dict(), @@ -166,4 +168,3 @@ def test_GLMFit_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ImageInfo.py b/nipype/interfaces/freesurfer/tests/test_auto_ImageInfo.py index 1e37537505..5d409f2966 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ImageInfo.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ImageInfo.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ImageInfo + def test_ImageInfo_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -24,6 +25,7 @@ def test_ImageInfo_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ImageInfo_outputs(): output_map = dict(TE=dict(), TI=dict(), @@ -42,4 +44,3 @@ def test_ImageInfo_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Label2Vol.py b/nipype/interfaces/freesurfer/tests/test_auto_Label2Vol.py index 5e294b9457..4ed1bb441c 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Label2Vol.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Label2Vol.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import Label2Vol + def test_Label2Vol_inputs(): input_map = dict(annot_file=dict(argstr='--annot %s', copyfile=False, @@ -77,6 +78,7 @@ def test_Label2Vol_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Label2Vol_outputs(): output_map = dict(vol_label_file=dict(), ) @@ -85,4 +87,3 @@ def test_Label2Vol_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIConvert.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIConvert.py index 29ed1ad76c..ad6fd9e55c 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIConvert.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIConvert.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import MRIConvert + def test_MRIConvert_inputs(): input_map = dict(apply_inv_transform=dict(argstr='--apply_inverse_transform %s', ), @@ -188,6 +189,7 @@ def test_MRIConvert_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MRIConvert_outputs(): output_map = dict(out_file=dict(), ) @@ -196,4 +198,3 @@ def test_MRIConvert_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIMarchingCubes.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIMarchingCubes.py index d91c90ca53..44c4725e8e 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIMarchingCubes.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIMarchingCubes.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import MRIMarchingCubes + def test_MRIMarchingCubes_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -37,6 +38,7 @@ def test_MRIMarchingCubes_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MRIMarchingCubes_outputs(): output_map = dict(surface=dict(), ) @@ -45,4 +47,3 @@ def test_MRIMarchingCubes_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIPretess.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIPretess.py index 07dbaf8b1c..ce3e7a244b 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIPretess.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIPretess.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import MRIPretess + def test_MRIPretess_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -44,6 +45,7 @@ def test_MRIPretess_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MRIPretess_outputs(): output_map = dict(out_file=dict(), ) @@ -52,4 +54,3 @@ def test_MRIPretess_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRISPreproc.py b/nipype/interfaces/freesurfer/tests/test_auto_MRISPreproc.py index 97af2b2602..306ca4cd8e 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRISPreproc.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRISPreproc.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import MRISPreproc + def test_MRISPreproc_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -70,6 +71,7 @@ def test_MRISPreproc_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MRISPreproc_outputs(): output_map = dict(out_file=dict(), ) @@ -78,4 +80,3 @@ def test_MRISPreproc_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRITessellate.py b/nipype/interfaces/freesurfer/tests/test_auto_MRITessellate.py index 1b25dbe252..3aea6fb331 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRITessellate.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRITessellate.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import MRITessellate + def test_MRITessellate_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -37,6 +38,7 @@ def test_MRITessellate_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MRITessellate_outputs(): output_map = dict(surface=dict(), ) @@ -45,4 +47,3 @@ def test_MRITessellate_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIsConvert.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIsConvert.py index 09a3a09dd3..ef99cd1f58 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIsConvert.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIsConvert.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import MRIsConvert + def test_MRIsConvert_inputs(): input_map = dict(annot_file=dict(argstr='--annot %s', ), @@ -61,6 +62,7 @@ def test_MRIsConvert_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MRIsConvert_outputs(): output_map = dict(converted=dict(), ) @@ -69,4 +71,3 @@ def test_MRIsConvert_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MS_LDA.py b/nipype/interfaces/freesurfer/tests/test_auto_MS_LDA.py index 6be8c00ea6..30264881c8 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MS_LDA.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MS_LDA.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import MS_LDA + def test_MS_LDA_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -46,6 +47,7 @@ def test_MS_LDA_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MS_LDA_outputs(): output_map = dict(vol_synth_file=dict(), weight_file=dict(), @@ -55,4 +57,3 @@ def test_MS_LDA_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MakeAverageSubject.py b/nipype/interfaces/freesurfer/tests/test_auto_MakeAverageSubject.py index 18570afbd7..5dd694a707 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MakeAverageSubject.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MakeAverageSubject.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import MakeAverageSubject + def test_MakeAverageSubject_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -28,6 +29,7 @@ def test_MakeAverageSubject_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MakeAverageSubject_outputs(): output_map = dict(average_subject_name=dict(), ) @@ -36,4 +38,3 @@ def test_MakeAverageSubject_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_OneSampleTTest.py b/nipype/interfaces/freesurfer/tests/test_auto_OneSampleTTest.py index e91215fcec..b33ecf5856 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_OneSampleTTest.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_OneSampleTTest.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import OneSampleTTest + def test_OneSampleTTest_inputs(): input_map = dict(allow_ill_cond=dict(argstr='--illcond', ), @@ -142,6 +143,7 @@ def test_OneSampleTTest_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_OneSampleTTest_outputs(): output_map = dict(beta_file=dict(), dof_file=dict(), @@ -166,4 +168,3 @@ def test_OneSampleTTest_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ParseDICOMDir.py b/nipype/interfaces/freesurfer/tests/test_auto_ParseDICOMDir.py index ff200ace85..a2afa891d9 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ParseDICOMDir.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ParseDICOMDir.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import ParseDICOMDir + def test_ParseDICOMDir_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_ParseDICOMDir_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ParseDICOMDir_outputs(): output_map = dict(dicom_info_file=dict(), ) @@ -39,4 +41,3 @@ def test_ParseDICOMDir_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ReconAll.py b/nipype/interfaces/freesurfer/tests/test_auto_ReconAll.py index d12305bcb2..11ffc6786c 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ReconAll.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ReconAll.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import ReconAll + def test_ReconAll_inputs(): input_map = dict(T1_files=dict(argstr='-i %s...', ), @@ -42,6 +43,7 @@ def test_ReconAll_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ReconAll_outputs(): output_map = dict(BA_stats=dict(altkey='BA', loc='stats', @@ -127,4 +129,3 @@ def test_ReconAll_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Resample.py b/nipype/interfaces/freesurfer/tests/test_auto_Resample.py index 71c212d0f6..befb0b9d01 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Resample.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Resample.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Resample + def test_Resample_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_Resample_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Resample_outputs(): output_map = dict(resampled_file=dict(), ) @@ -40,4 +42,3 @@ def test_Resample_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_RobustRegister.py b/nipype/interfaces/freesurfer/tests/test_auto_RobustRegister.py index 88ad8be0c1..9c52782acc 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_RobustRegister.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_RobustRegister.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import RobustRegister + def test_RobustRegister_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -86,6 +87,7 @@ def test_RobustRegister_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_RobustRegister_outputs(): output_map = dict(half_source=dict(), half_source_xfm=dict(), @@ -101,4 +103,3 @@ def test_RobustRegister_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py b/nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py index add9a45d9f..8a08a621f8 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import SampleToSurface + def test_SampleToSurface_inputs(): input_map = dict(apply_rot=dict(argstr='--rot %.3f %.3f %.3f', ), @@ -109,6 +110,7 @@ def test_SampleToSurface_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SampleToSurface_outputs(): output_map = dict(hits_file=dict(), out_file=dict(), @@ -119,4 +121,3 @@ def test_SampleToSurface_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SegStats.py b/nipype/interfaces/freesurfer/tests/test_auto_SegStats.py index 5c51c8726f..2a69e99de3 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SegStats.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SegStats.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import SegStats + def test_SegStats_inputs(): input_map = dict(annot=dict(argstr='--annot %s %s %s', mandatory=True, @@ -92,6 +93,7 @@ def test_SegStats_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SegStats_outputs(): output_map = dict(avgwf_file=dict(), avgwf_txt_file=dict(), @@ -103,4 +105,3 @@ def test_SegStats_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Smooth.py b/nipype/interfaces/freesurfer/tests/test_auto_Smooth.py index 07ea5583db..16fefa2873 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Smooth.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Smooth.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Smooth + def test_Smooth_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -47,6 +48,7 @@ def test_Smooth_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Smooth_outputs(): output_map = dict(smoothed_file=dict(), ) @@ -55,4 +57,3 @@ def test_Smooth_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SmoothTessellation.py b/nipype/interfaces/freesurfer/tests/test_auto_SmoothTessellation.py index 33c38965ba..2ba9b80134 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SmoothTessellation.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SmoothTessellation.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import SmoothTessellation + def test_SmoothTessellation_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -58,6 +59,7 @@ def test_SmoothTessellation_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SmoothTessellation_outputs(): output_map = dict(surface=dict(), ) @@ -66,4 +68,3 @@ def test_SmoothTessellation_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Surface2VolTransform.py b/nipype/interfaces/freesurfer/tests/test_auto_Surface2VolTransform.py index 65296762f6..42689a458b 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Surface2VolTransform.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Surface2VolTransform.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Surface2VolTransform + def test_Surface2VolTransform_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -54,6 +55,7 @@ def test_Surface2VolTransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Surface2VolTransform_outputs(): output_map = dict(transformed_file=dict(), vertexvol_file=dict(), @@ -63,4 +65,3 @@ def test_Surface2VolTransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSmooth.py b/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSmooth.py index d519f8d413..92d145cfc9 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSmooth.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSmooth.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import SurfaceSmooth + def test_SurfaceSmooth_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -44,6 +45,7 @@ def test_SurfaceSmooth_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SurfaceSmooth_outputs(): output_map = dict(out_file=dict(), ) @@ -52,4 +54,3 @@ def test_SurfaceSmooth_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSnapshots.py b/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSnapshots.py index 89907da712..46411c9fca 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSnapshots.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSnapshots.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import SurfaceSnapshots + def test_SurfaceSnapshots_inputs(): input_map = dict(annot_file=dict(argstr='-annotation %s', xor=['annot_name'], @@ -98,6 +99,7 @@ def test_SurfaceSnapshots_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SurfaceSnapshots_outputs(): output_map = dict(snapshots=dict(), ) @@ -106,4 +108,3 @@ def test_SurfaceSnapshots_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SurfaceTransform.py b/nipype/interfaces/freesurfer/tests/test_auto_SurfaceTransform.py index 1567b402c5..250f697402 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SurfaceTransform.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SurfaceTransform.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import SurfaceTransform + def test_SurfaceTransform_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -52,6 +53,7 @@ def test_SurfaceTransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SurfaceTransform_outputs(): output_map = dict(out_file=dict(), ) @@ -60,4 +62,3 @@ def test_SurfaceTransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SynthesizeFLASH.py b/nipype/interfaces/freesurfer/tests/test_auto_SynthesizeFLASH.py index c507b91e7c..fc213c7411 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SynthesizeFLASH.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SynthesizeFLASH.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import SynthesizeFLASH + def test_SynthesizeFLASH_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -47,6 +48,7 @@ def test_SynthesizeFLASH_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SynthesizeFLASH_outputs(): output_map = dict(out_file=dict(), ) @@ -55,4 +57,3 @@ def test_SynthesizeFLASH_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Tkregister2.py b/nipype/interfaces/freesurfer/tests/test_auto_Tkregister2.py index 5e03c1fc26..150bfac675 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Tkregister2.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Tkregister2.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Tkregister2 + def test_Tkregister2_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -52,6 +53,7 @@ def test_Tkregister2_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Tkregister2_outputs(): output_map = dict(fsl_file=dict(), reg_file=dict(), @@ -61,4 +63,3 @@ def test_Tkregister2_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/freesurfer/tests/test_auto_UnpackSDICOMDir.py b/nipype/interfaces/freesurfer/tests/test_auto_UnpackSDICOMDir.py index fc9cdca56b..40e1c65378 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_UnpackSDICOMDir.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_UnpackSDICOMDir.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import UnpackSDICOMDir + def test_UnpackSDICOMDir_inputs(): input_map = dict(args=dict(argstr='%s', ), diff --git a/nipype/interfaces/fsl/tests/test_auto_ApplyMask.py b/nipype/interfaces/fsl/tests/test_auto_ApplyMask.py index a771f914e1..d374567662 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ApplyMask.py +++ b/nipype/interfaces/fsl/tests/test_auto_ApplyMask.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import ApplyMask + def test_ApplyMask_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -43,6 +44,7 @@ def test_ApplyMask_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ApplyMask_outputs(): output_map = dict(out_file=dict(), ) @@ -51,4 +53,3 @@ def test_ApplyMask_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ApplyTOPUP.py b/nipype/interfaces/fsl/tests/test_auto_ApplyTOPUP.py index b6f0d00fcc..77a11e3232 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ApplyTOPUP.py +++ b/nipype/interfaces/fsl/tests/test_auto_ApplyTOPUP.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..epi import ApplyTOPUP + def test_ApplyTOPUP_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -49,6 +50,7 @@ def test_ApplyTOPUP_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ApplyTOPUP_outputs(): output_map = dict(out_corrected=dict(), ) @@ -57,4 +59,3 @@ def test_ApplyTOPUP_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ApplyWarp.py b/nipype/interfaces/fsl/tests/test_auto_ApplyWarp.py index 8cb17890dd..47e2703cb6 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ApplyWarp.py +++ b/nipype/interfaces/fsl/tests/test_auto_ApplyWarp.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import ApplyWarp + def test_ApplyWarp_inputs(): input_map = dict(abswarp=dict(argstr='--abs', xor=['relwarp'], @@ -58,6 +59,7 @@ def test_ApplyWarp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ApplyWarp_outputs(): output_map = dict(out_file=dict(), ) @@ -66,4 +68,3 @@ def test_ApplyWarp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ApplyXfm.py b/nipype/interfaces/fsl/tests/test_auto_ApplyXfm.py index ed830ba059..897d6478ed 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ApplyXfm.py +++ b/nipype/interfaces/fsl/tests/test_auto_ApplyXfm.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import ApplyXfm + def test_ApplyXfm_inputs(): input_map = dict(angle_rep=dict(argstr='-anglerep %s', ), @@ -150,6 +151,7 @@ def test_ApplyXfm_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ApplyXfm_outputs(): output_map = dict(out_file=dict(), out_log=dict(), @@ -160,4 +162,3 @@ def test_ApplyXfm_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_AvScale.py b/nipype/interfaces/fsl/tests/test_auto_AvScale.py index 5d62437360..0d750ddbc0 100644 --- a/nipype/interfaces/fsl/tests/test_auto_AvScale.py +++ b/nipype/interfaces/fsl/tests/test_auto_AvScale.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import AvScale + def test_AvScale_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -24,6 +25,7 @@ def test_AvScale_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_AvScale_outputs(): output_map = dict(average_scaling=dict(), backward_half_transform=dict(), @@ -39,4 +41,3 @@ def test_AvScale_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_BEDPOSTX4.py b/nipype/interfaces/fsl/tests/test_auto_BEDPOSTX4.py index 677cc8c089..ca71395c20 100644 --- a/nipype/interfaces/fsl/tests/test_auto_BEDPOSTX4.py +++ b/nipype/interfaces/fsl/tests/test_auto_BEDPOSTX4.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import BEDPOSTX4 + def test_BEDPOSTX4_inputs(): input_map = dict(all_ard=dict(argstr='--allard', xor=('no_ard', 'all_ard'), @@ -84,6 +85,7 @@ def test_BEDPOSTX4_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BEDPOSTX4_outputs(): output_map = dict(bpx_out_directory=dict(), dyads=dict(), @@ -100,4 +102,3 @@ def test_BEDPOSTX4_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_BEDPOSTX5.py b/nipype/interfaces/fsl/tests/test_auto_BEDPOSTX5.py index 1d7fc047a8..48f229eabd 100644 --- a/nipype/interfaces/fsl/tests/test_auto_BEDPOSTX5.py +++ b/nipype/interfaces/fsl/tests/test_auto_BEDPOSTX5.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import BEDPOSTX5 + def test_BEDPOSTX5_inputs(): input_map = dict(all_ard=dict(argstr='--allard', xor=('no_ard', 'all_ard'), @@ -85,6 +86,7 @@ def test_BEDPOSTX5_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BEDPOSTX5_outputs(): output_map = dict(dyads=dict(), dyads_dispersion=dict(), @@ -102,4 +104,3 @@ def test_BEDPOSTX5_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_BET.py b/nipype/interfaces/fsl/tests/test_auto_BET.py index 242f27753a..9f91d76d2f 100644 --- a/nipype/interfaces/fsl/tests/test_auto_BET.py +++ b/nipype/interfaces/fsl/tests/test_auto_BET.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import BET + def test_BET_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -73,6 +74,7 @@ def test_BET_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BET_outputs(): output_map = dict(inskull_mask_file=dict(), inskull_mesh_file=dict(), @@ -91,4 +93,3 @@ def test_BET_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_BinaryMaths.py b/nipype/interfaces/fsl/tests/test_auto_BinaryMaths.py index 34db882f71..dfc8dcec09 100644 --- a/nipype/interfaces/fsl/tests/test_auto_BinaryMaths.py +++ b/nipype/interfaces/fsl/tests/test_auto_BinaryMaths.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import BinaryMaths + def test_BinaryMaths_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -53,6 +54,7 @@ def test_BinaryMaths_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BinaryMaths_outputs(): output_map = dict(out_file=dict(), ) @@ -61,4 +63,3 @@ def test_BinaryMaths_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ChangeDataType.py b/nipype/interfaces/fsl/tests/test_auto_ChangeDataType.py index 5ce774f9de..4de7103895 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ChangeDataType.py +++ b/nipype/interfaces/fsl/tests/test_auto_ChangeDataType.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import ChangeDataType + def test_ChangeDataType_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_ChangeDataType_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ChangeDataType_outputs(): output_map = dict(out_file=dict(), ) @@ -48,4 +50,3 @@ def test_ChangeDataType_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_Cluster.py b/nipype/interfaces/fsl/tests/test_auto_Cluster.py index f96db2b872..7b460a5fd6 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Cluster.py +++ b/nipype/interfaces/fsl/tests/test_auto_Cluster.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import Cluster + def test_Cluster_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -78,6 +79,7 @@ def test_Cluster_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Cluster_outputs(): output_map = dict(index_file=dict(), localmax_txt_file=dict(), @@ -93,4 +95,3 @@ def test_Cluster_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_Complex.py b/nipype/interfaces/fsl/tests/test_auto_Complex.py index dc0e3e7edd..eae95be846 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Complex.py +++ b/nipype/interfaces/fsl/tests/test_auto_Complex.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Complex + def test_Complex_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -94,6 +95,7 @@ def test_Complex_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Complex_outputs(): output_map = dict(complex_out_file=dict(), imaginary_out_file=dict(), @@ -106,4 +108,3 @@ def test_Complex_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ContrastMgr.py b/nipype/interfaces/fsl/tests/test_auto_ContrastMgr.py index 4bf7c7a78d..361f9cd086 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ContrastMgr.py +++ b/nipype/interfaces/fsl/tests/test_auto_ContrastMgr.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import ContrastMgr + def test_ContrastMgr_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -47,6 +48,7 @@ def test_ContrastMgr_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ContrastMgr_outputs(): output_map = dict(copes=dict(), fstats=dict(), @@ -61,4 +63,3 @@ def test_ContrastMgr_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ConvertWarp.py b/nipype/interfaces/fsl/tests/test_auto_ConvertWarp.py index d87cc28a93..d140396548 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ConvertWarp.py +++ b/nipype/interfaces/fsl/tests/test_auto_ConvertWarp.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ConvertWarp + def test_ConvertWarp_inputs(): input_map = dict(abswarp=dict(argstr='--abs', xor=['relwarp'], @@ -64,6 +65,7 @@ def test_ConvertWarp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ConvertWarp_outputs(): output_map = dict(out_file=dict(), ) @@ -72,4 +74,3 @@ def test_ConvertWarp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ConvertXFM.py b/nipype/interfaces/fsl/tests/test_auto_ConvertXFM.py index 43ca0d63c9..21bfe5ff1c 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ConvertXFM.py +++ b/nipype/interfaces/fsl/tests/test_auto_ConvertXFM.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ConvertXFM + def test_ConvertXFM_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -47,6 +48,7 @@ def test_ConvertXFM_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ConvertXFM_outputs(): output_map = dict(out_file=dict(), ) @@ -55,4 +57,3 @@ def test_ConvertXFM_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_CopyGeom.py b/nipype/interfaces/fsl/tests/test_auto_CopyGeom.py index 9c0a9104fe..75e58ee331 100644 --- a/nipype/interfaces/fsl/tests/test_auto_CopyGeom.py +++ b/nipype/interfaces/fsl/tests/test_auto_CopyGeom.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import CopyGeom + def test_CopyGeom_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -36,6 +37,7 @@ def test_CopyGeom_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CopyGeom_outputs(): output_map = dict(out_file=dict(), ) @@ -44,4 +46,3 @@ def test_CopyGeom_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_DTIFit.py b/nipype/interfaces/fsl/tests/test_auto_DTIFit.py index 53fedc778e..803a78b930 100644 --- a/nipype/interfaces/fsl/tests/test_auto_DTIFit.py +++ b/nipype/interfaces/fsl/tests/test_auto_DTIFit.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import DTIFit + def test_DTIFit_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -63,6 +64,7 @@ def test_DTIFit_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DTIFit_outputs(): output_map = dict(FA=dict(), L1=dict(), @@ -81,4 +83,3 @@ def test_DTIFit_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_DilateImage.py b/nipype/interfaces/fsl/tests/test_auto_DilateImage.py index 93c4ea8faa..7c0f3e9823 100644 --- a/nipype/interfaces/fsl/tests/test_auto_DilateImage.py +++ b/nipype/interfaces/fsl/tests/test_auto_DilateImage.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import DilateImage + def test_DilateImage_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -54,6 +55,7 @@ def test_DilateImage_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DilateImage_outputs(): output_map = dict(out_file=dict(), ) @@ -62,4 +64,3 @@ def test_DilateImage_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_DistanceMap.py b/nipype/interfaces/fsl/tests/test_auto_DistanceMap.py index 1a217d6127..083590ed5d 100644 --- a/nipype/interfaces/fsl/tests/test_auto_DistanceMap.py +++ b/nipype/interfaces/fsl/tests/test_auto_DistanceMap.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import DistanceMap + def test_DistanceMap_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -35,6 +36,7 @@ def test_DistanceMap_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DistanceMap_outputs(): output_map = dict(distance_map=dict(), local_max_file=dict(), @@ -44,4 +46,3 @@ def test_DistanceMap_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_EPIDeWarp.py b/nipype/interfaces/fsl/tests/test_auto_EPIDeWarp.py index cd92a2d776..2f1eaf2522 100644 --- a/nipype/interfaces/fsl/tests/test_auto_EPIDeWarp.py +++ b/nipype/interfaces/fsl/tests/test_auto_EPIDeWarp.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..epi import EPIDeWarp + def test_EPIDeWarp_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -58,6 +59,7 @@ def test_EPIDeWarp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_EPIDeWarp_outputs(): output_map = dict(exf_mask=dict(), exfdw=dict(), @@ -69,4 +71,3 @@ def test_EPIDeWarp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_Eddy.py b/nipype/interfaces/fsl/tests/test_auto_Eddy.py index 8b5298cbca..07b17244c9 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Eddy.py +++ b/nipype/interfaces/fsl/tests/test_auto_Eddy.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..epi import Eddy + def test_Eddy_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -62,6 +63,7 @@ def test_Eddy_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Eddy_outputs(): output_map = dict(out_corrected=dict(), out_parameter=dict(), @@ -71,4 +73,3 @@ def test_Eddy_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_EddyCorrect.py b/nipype/interfaces/fsl/tests/test_auto_EddyCorrect.py index 68fbf8f798..b7f93f0b52 100644 --- a/nipype/interfaces/fsl/tests/test_auto_EddyCorrect.py +++ b/nipype/interfaces/fsl/tests/test_auto_EddyCorrect.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..epi import EddyCorrect + def test_EddyCorrect_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -36,6 +37,7 @@ def test_EddyCorrect_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_EddyCorrect_outputs(): output_map = dict(eddy_corrected=dict(), ) @@ -44,4 +46,3 @@ def test_EddyCorrect_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_EpiReg.py b/nipype/interfaces/fsl/tests/test_auto_EpiReg.py index 9be961c33b..8cde315c16 100644 --- a/nipype/interfaces/fsl/tests/test_auto_EpiReg.py +++ b/nipype/interfaces/fsl/tests/test_auto_EpiReg.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..epi import EpiReg + def test_EpiReg_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -55,6 +56,7 @@ def test_EpiReg_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_EpiReg_outputs(): output_map = dict(epi2str_inv=dict(), epi2str_mat=dict(), @@ -75,4 +77,3 @@ def test_EpiReg_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ErodeImage.py b/nipype/interfaces/fsl/tests/test_auto_ErodeImage.py index 7c27b20f6d..3981afc1a5 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ErodeImage.py +++ b/nipype/interfaces/fsl/tests/test_auto_ErodeImage.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import ErodeImage + def test_ErodeImage_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -54,6 +55,7 @@ def test_ErodeImage_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ErodeImage_outputs(): output_map = dict(out_file=dict(), ) @@ -62,4 +64,3 @@ def test_ErodeImage_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ExtractROI.py b/nipype/interfaces/fsl/tests/test_auto_ExtractROI.py index 23708a2df3..4368a41256 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ExtractROI.py +++ b/nipype/interfaces/fsl/tests/test_auto_ExtractROI.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ExtractROI + def test_ExtractROI_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -58,6 +59,7 @@ def test_ExtractROI_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ExtractROI_outputs(): output_map = dict(roi_file=dict(), ) @@ -66,4 +68,3 @@ def test_ExtractROI_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_FAST.py b/nipype/interfaces/fsl/tests/test_auto_FAST.py index e50fb80951..3dc8ca73f2 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FAST.py +++ b/nipype/interfaces/fsl/tests/test_auto_FAST.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import FAST + def test_FAST_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -69,6 +70,7 @@ def test_FAST_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FAST_outputs(): output_map = dict(bias_field=dict(), mixeltype=dict(), @@ -84,4 +86,3 @@ def test_FAST_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_FEAT.py b/nipype/interfaces/fsl/tests/test_auto_FEAT.py index 66a8e88419..8500302502 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FEAT.py +++ b/nipype/interfaces/fsl/tests/test_auto_FEAT.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import FEAT + def test_FEAT_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -25,6 +26,7 @@ def test_FEAT_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FEAT_outputs(): output_map = dict(feat_dir=dict(), ) @@ -33,4 +35,3 @@ def test_FEAT_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_FEATModel.py b/nipype/interfaces/fsl/tests/test_auto_FEATModel.py index 0db2b6dd46..06cbe57d84 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FEATModel.py +++ b/nipype/interfaces/fsl/tests/test_auto_FEATModel.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import FEATModel + def test_FEATModel_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_FEATModel_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FEATModel_outputs(): output_map = dict(con_file=dict(), design_cov=dict(), @@ -43,4 +45,3 @@ def test_FEATModel_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_FEATRegister.py b/nipype/interfaces/fsl/tests/test_auto_FEATRegister.py index b3b1ebac68..3af3b4695d 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FEATRegister.py +++ b/nipype/interfaces/fsl/tests/test_auto_FEATRegister.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import FEATRegister + def test_FEATRegister_inputs(): input_map = dict(feat_dirs=dict(mandatory=True, ), @@ -19,6 +20,7 @@ def test_FEATRegister_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FEATRegister_outputs(): output_map = dict(fsf_file=dict(), ) @@ -27,4 +29,3 @@ def test_FEATRegister_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_FIRST.py b/nipype/interfaces/fsl/tests/test_auto_FIRST.py index ac94aa5873..876f89f5b6 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FIRST.py +++ b/nipype/interfaces/fsl/tests/test_auto_FIRST.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import FIRST + def test_FIRST_inputs(): input_map = dict(affine_file=dict(argstr='-a %s', position=6, @@ -56,6 +57,7 @@ def test_FIRST_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FIRST_outputs(): output_map = dict(bvars=dict(), original_segmentations=dict(), @@ -67,4 +69,3 @@ def test_FIRST_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_FLAMEO.py b/nipype/interfaces/fsl/tests/test_auto_FLAMEO.py index 496b9fc85b..bd4d938ffb 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FLAMEO.py +++ b/nipype/interfaces/fsl/tests/test_auto_FLAMEO.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import FLAMEO + def test_FLAMEO_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -64,6 +65,7 @@ def test_FLAMEO_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FLAMEO_outputs(): output_map = dict(copes=dict(), fstats=dict(), @@ -83,4 +85,3 @@ def test_FLAMEO_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_FLIRT.py b/nipype/interfaces/fsl/tests/test_auto_FLIRT.py index 17bf945b48..8bba532da8 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FLIRT.py +++ b/nipype/interfaces/fsl/tests/test_auto_FLIRT.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import FLIRT + def test_FLIRT_inputs(): input_map = dict(angle_rep=dict(argstr='-anglerep %s', ), @@ -149,6 +150,7 @@ def test_FLIRT_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FLIRT_outputs(): output_map = dict(out_file=dict(), out_log=dict(), @@ -159,4 +161,3 @@ def test_FLIRT_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_FNIRT.py b/nipype/interfaces/fsl/tests/test_auto_FNIRT.py index 696d2044a4..f37e3b7eb2 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FNIRT.py +++ b/nipype/interfaces/fsl/tests/test_auto_FNIRT.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import FNIRT + def test_FNIRT_inputs(): input_map = dict(affine_file=dict(argstr='--aff=%s', ), @@ -127,6 +128,7 @@ def test_FNIRT_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FNIRT_outputs(): output_map = dict(field_file=dict(), fieldcoeff_file=dict(), @@ -141,4 +143,3 @@ def test_FNIRT_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_FSLCommand.py b/nipype/interfaces/fsl/tests/test_auto_FSLCommand.py index 07fe34c5f2..c5b0bb63a2 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FSLCommand.py +++ b/nipype/interfaces/fsl/tests/test_auto_FSLCommand.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..base import FSLCommand + def test_FSLCommand_inputs(): input_map = dict(args=dict(argstr='%s', ), diff --git a/nipype/interfaces/fsl/tests/test_auto_FSLXCommand.py b/nipype/interfaces/fsl/tests/test_auto_FSLXCommand.py index b0e9a35d18..57b06760d5 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FSLXCommand.py +++ b/nipype/interfaces/fsl/tests/test_auto_FSLXCommand.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import FSLXCommand + def test_FSLXCommand_inputs(): input_map = dict(all_ard=dict(argstr='--allard', xor=('no_ard', 'all_ard'), @@ -82,6 +83,7 @@ def test_FSLXCommand_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FSLXCommand_outputs(): output_map = dict(dyads=dict(), fsamples=dict(), @@ -97,4 +99,3 @@ def test_FSLXCommand_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_FUGUE.py b/nipype/interfaces/fsl/tests/test_auto_FUGUE.py index 69f21693a0..84de7126df 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FUGUE.py +++ b/nipype/interfaces/fsl/tests/test_auto_FUGUE.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import FUGUE + def test_FUGUE_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -93,6 +94,7 @@ def test_FUGUE_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FUGUE_outputs(): output_map = dict(fmap_out_file=dict(), shift_out_file=dict(), @@ -104,4 +106,3 @@ def test_FUGUE_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_FilterRegressor.py b/nipype/interfaces/fsl/tests/test_auto_FilterRegressor.py index 913a8feb27..2904b70798 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FilterRegressor.py +++ b/nipype/interfaces/fsl/tests/test_auto_FilterRegressor.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import FilterRegressor + def test_FilterRegressor_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -50,6 +51,7 @@ def test_FilterRegressor_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FilterRegressor_outputs(): output_map = dict(out_file=dict(), ) @@ -58,4 +60,3 @@ def test_FilterRegressor_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_FindTheBiggest.py b/nipype/interfaces/fsl/tests/test_auto_FindTheBiggest.py index 015928d443..0fd902dbf0 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FindTheBiggest.py +++ b/nipype/interfaces/fsl/tests/test_auto_FindTheBiggest.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import FindTheBiggest + def test_FindTheBiggest_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -30,6 +31,7 @@ def test_FindTheBiggest_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FindTheBiggest_outputs(): output_map = dict(out_file=dict(argstr='%s', ), @@ -39,4 +41,3 @@ def test_FindTheBiggest_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_GLM.py b/nipype/interfaces/fsl/tests/test_auto_GLM.py index 09a15af967..3aeef972c0 100644 --- a/nipype/interfaces/fsl/tests/test_auto_GLM.py +++ b/nipype/interfaces/fsl/tests/test_auto_GLM.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import GLM + def test_GLM_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -71,6 +72,7 @@ def test_GLM_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GLM_outputs(): output_map = dict(out_cope=dict(), out_data=dict(), @@ -90,4 +92,3 @@ def test_GLM_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ImageMaths.py b/nipype/interfaces/fsl/tests/test_auto_ImageMaths.py index 671a9a8f7a..008516f571 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ImageMaths.py +++ b/nipype/interfaces/fsl/tests/test_auto_ImageMaths.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ImageMaths + def test_ImageMaths_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_ImageMaths_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ImageMaths_outputs(): output_map = dict(out_file=dict(), ) @@ -48,4 +50,3 @@ def test_ImageMaths_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ImageMeants.py b/nipype/interfaces/fsl/tests/test_auto_ImageMeants.py index e726e775c8..2a07ee64f0 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ImageMeants.py +++ b/nipype/interfaces/fsl/tests/test_auto_ImageMeants.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ImageMeants + def test_ImageMeants_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -46,6 +47,7 @@ def test_ImageMeants_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ImageMeants_outputs(): output_map = dict(out_file=dict(), ) @@ -54,4 +56,3 @@ def test_ImageMeants_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ImageStats.py b/nipype/interfaces/fsl/tests/test_auto_ImageStats.py index 72e4e0b5b3..86be9772c4 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ImageStats.py +++ b/nipype/interfaces/fsl/tests/test_auto_ImageStats.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ImageStats + def test_ImageStats_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_ImageStats_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ImageStats_outputs(): output_map = dict(out_stat=dict(), ) @@ -42,4 +44,3 @@ def test_ImageStats_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_InvWarp.py b/nipype/interfaces/fsl/tests/test_auto_InvWarp.py index c0910b5cb0..ad367bf904 100644 --- a/nipype/interfaces/fsl/tests/test_auto_InvWarp.py +++ b/nipype/interfaces/fsl/tests/test_auto_InvWarp.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import InvWarp + def test_InvWarp_inputs(): input_map = dict(absolute=dict(argstr='--abs', xor=['relative'], @@ -48,6 +49,7 @@ def test_InvWarp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_InvWarp_outputs(): output_map = dict(inverse_warp=dict(), ) @@ -56,4 +58,3 @@ def test_InvWarp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py b/nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py index 89ab3ebeab..2d1023d674 100644 --- a/nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py +++ b/nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import IsotropicSmooth + def test_IsotropicSmooth_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -49,6 +50,7 @@ def test_IsotropicSmooth_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_IsotropicSmooth_outputs(): output_map = dict(out_file=dict(), ) @@ -57,4 +59,3 @@ def test_IsotropicSmooth_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_L2Model.py b/nipype/interfaces/fsl/tests/test_auto_L2Model.py index 996410a5ec..bcf3737fdd 100644 --- a/nipype/interfaces/fsl/tests/test_auto_L2Model.py +++ b/nipype/interfaces/fsl/tests/test_auto_L2Model.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import L2Model + def test_L2Model_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -15,6 +16,7 @@ def test_L2Model_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_L2Model_outputs(): output_map = dict(design_con=dict(), design_grp=dict(), @@ -25,4 +27,3 @@ def test_L2Model_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_Level1Design.py b/nipype/interfaces/fsl/tests/test_auto_Level1Design.py index 8b9a245cea..f1500d42be 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Level1Design.py +++ b/nipype/interfaces/fsl/tests/test_auto_Level1Design.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import Level1Design + def test_Level1Design_inputs(): input_map = dict(bases=dict(mandatory=True, ), @@ -22,6 +23,7 @@ def test_Level1Design_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Level1Design_outputs(): output_map = dict(ev_files=dict(), fsf_files=dict(), @@ -31,4 +33,3 @@ def test_Level1Design_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py b/nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py index 1afc30885a..355c9ab527 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py +++ b/nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import MCFLIRT + def test_MCFLIRT_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -65,6 +66,7 @@ def test_MCFLIRT_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MCFLIRT_outputs(): output_map = dict(mat_file=dict(), mean_img=dict(), @@ -79,4 +81,3 @@ def test_MCFLIRT_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_MELODIC.py b/nipype/interfaces/fsl/tests/test_auto_MELODIC.py index 6baf56e764..3f4c0047ca 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MELODIC.py +++ b/nipype/interfaces/fsl/tests/test_auto_MELODIC.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import MELODIC + def test_MELODIC_inputs(): input_map = dict(ICs=dict(argstr='--ICs=%s', ), @@ -113,6 +114,7 @@ def test_MELODIC_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MELODIC_outputs(): output_map = dict(out_dir=dict(), report_dir=dict(), @@ -122,4 +124,3 @@ def test_MELODIC_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py b/nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py index b1b1c5bdaf..cbc35e34c9 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py +++ b/nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import MakeDyadicVectors + def test_MakeDyadicVectors_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_MakeDyadicVectors_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MakeDyadicVectors_outputs(): output_map = dict(dispersion=dict(), dyads=dict(), @@ -49,4 +51,3 @@ def test_MakeDyadicVectors_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_MathsCommand.py b/nipype/interfaces/fsl/tests/test_auto_MathsCommand.py index c931261962..3c3eee3d14 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MathsCommand.py +++ b/nipype/interfaces/fsl/tests/test_auto_MathsCommand.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import MathsCommand + def test_MathsCommand_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -39,6 +40,7 @@ def test_MathsCommand_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MathsCommand_outputs(): output_map = dict(out_file=dict(), ) @@ -47,4 +49,3 @@ def test_MathsCommand_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_MaxImage.py b/nipype/interfaces/fsl/tests/test_auto_MaxImage.py index 86732a6af2..4edd2cfb13 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MaxImage.py +++ b/nipype/interfaces/fsl/tests/test_auto_MaxImage.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import MaxImage + def test_MaxImage_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -43,6 +44,7 @@ def test_MaxImage_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MaxImage_outputs(): output_map = dict(out_file=dict(), ) @@ -51,4 +53,3 @@ def test_MaxImage_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_MeanImage.py b/nipype/interfaces/fsl/tests/test_auto_MeanImage.py index fba966582b..f6792d368d 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MeanImage.py +++ b/nipype/interfaces/fsl/tests/test_auto_MeanImage.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import MeanImage + def test_MeanImage_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -43,6 +44,7 @@ def test_MeanImage_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MeanImage_outputs(): output_map = dict(out_file=dict(), ) @@ -51,4 +53,3 @@ def test_MeanImage_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_Merge.py b/nipype/interfaces/fsl/tests/test_auto_Merge.py index 9a882c9a18..621d43dd65 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Merge.py +++ b/nipype/interfaces/fsl/tests/test_auto_Merge.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Merge + def test_Merge_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -38,6 +39,7 @@ def test_Merge_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Merge_outputs(): output_map = dict(merged_file=dict(), ) @@ -46,4 +48,3 @@ def test_Merge_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py b/nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py index d0ffbb9d34..d8d88d809e 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py +++ b/nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import MotionOutliers + def test_MotionOutliers_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -52,6 +53,7 @@ def test_MotionOutliers_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MotionOutliers_outputs(): output_map = dict(out_file=dict(), out_metric_plot=dict(), @@ -62,4 +64,3 @@ def test_MotionOutliers_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py b/nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py index 04a8c10c23..91b5f03657 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py +++ b/nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import MultiImageMaths + def test_MultiImageMaths_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -45,6 +46,7 @@ def test_MultiImageMaths_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MultiImageMaths_outputs(): output_map = dict(out_file=dict(), ) @@ -53,4 +55,3 @@ def test_MultiImageMaths_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py b/nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py index 688a5bf29e..5e4a88cf79 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py +++ b/nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import MultipleRegressDesign + def test_MultipleRegressDesign_inputs(): input_map = dict(contrasts=dict(mandatory=True, ), @@ -18,6 +19,7 @@ def test_MultipleRegressDesign_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MultipleRegressDesign_outputs(): output_map = dict(design_con=dict(), design_fts=dict(), @@ -29,4 +31,3 @@ def test_MultipleRegressDesign_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_Overlay.py b/nipype/interfaces/fsl/tests/test_auto_Overlay.py index 091657fd1e..14257803be 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Overlay.py +++ b/nipype/interfaces/fsl/tests/test_auto_Overlay.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Overlay + def test_Overlay_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -75,6 +76,7 @@ def test_Overlay_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Overlay_outputs(): output_map = dict(out_file=dict(), ) @@ -83,4 +85,3 @@ def test_Overlay_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_PRELUDE.py b/nipype/interfaces/fsl/tests/test_auto_PRELUDE.py index 08dd904b26..434322da60 100644 --- a/nipype/interfaces/fsl/tests/test_auto_PRELUDE.py +++ b/nipype/interfaces/fsl/tests/test_auto_PRELUDE.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import PRELUDE + def test_PRELUDE_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -66,6 +67,7 @@ def test_PRELUDE_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_PRELUDE_outputs(): output_map = dict(unwrapped_phase_file=dict(), ) @@ -74,4 +76,3 @@ def test_PRELUDE_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py b/nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py index 583394d138..75d376e32e 100644 --- a/nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py +++ b/nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import PlotMotionParams + def test_PlotMotionParams_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -36,6 +37,7 @@ def test_PlotMotionParams_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_PlotMotionParams_outputs(): output_map = dict(out_file=dict(), ) @@ -44,4 +46,3 @@ def test_PlotMotionParams_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py b/nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py index bfb76d8043..e8c28c68de 100644 --- a/nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py +++ b/nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import PlotTimeSeries + def test_PlotTimeSeries_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -62,6 +63,7 @@ def test_PlotTimeSeries_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_PlotTimeSeries_outputs(): output_map = dict(out_file=dict(), ) @@ -70,4 +72,3 @@ def test_PlotTimeSeries_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py b/nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py index 1f495918ce..bacda34c21 100644 --- a/nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py +++ b/nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import PowerSpectrum + def test_PowerSpectrum_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -30,6 +31,7 @@ def test_PowerSpectrum_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_PowerSpectrum_outputs(): output_map = dict(out_file=dict(), ) @@ -38,4 +40,3 @@ def test_PowerSpectrum_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py b/nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py index e164bda3ac..01aea929dc 100644 --- a/nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py +++ b/nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..epi import PrepareFieldmap + def test_PrepareFieldmap_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -45,6 +46,7 @@ def test_PrepareFieldmap_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_PrepareFieldmap_outputs(): output_map = dict(out_fieldmap=dict(), ) @@ -53,4 +55,3 @@ def test_PrepareFieldmap_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py b/nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py index 4793039e07..a4b60ff6f6 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py +++ b/nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import ProbTrackX + def test_ProbTrackX_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -101,6 +102,7 @@ def test_ProbTrackX_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ProbTrackX_outputs(): output_map = dict(fdt_paths=dict(), log=dict(), @@ -113,4 +115,3 @@ def test_ProbTrackX_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py b/nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py index b6946401c3..df69f76670 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py +++ b/nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import ProbTrackX2 + def test_ProbTrackX2_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -131,6 +132,7 @@ def test_ProbTrackX2_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ProbTrackX2_outputs(): output_map = dict(fdt_paths=dict(), log=dict(), @@ -148,4 +150,3 @@ def test_ProbTrackX2_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_ProjThresh.py b/nipype/interfaces/fsl/tests/test_auto_ProjThresh.py index f9403de75c..a8fbd352a9 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ProjThresh.py +++ b/nipype/interfaces/fsl/tests/test_auto_ProjThresh.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import ProjThresh + def test_ProjThresh_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_ProjThresh_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ProjThresh_outputs(): output_map = dict(out_files=dict(), ) @@ -37,4 +39,3 @@ def test_ProjThresh_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_Randomise.py b/nipype/interfaces/fsl/tests/test_auto_Randomise.py index 97d2ff6352..72a38393fd 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Randomise.py +++ b/nipype/interfaces/fsl/tests/test_auto_Randomise.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import Randomise + def test_Randomise_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -81,6 +82,7 @@ def test_Randomise_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Randomise_outputs(): output_map = dict(f_corrected_p_files=dict(), f_p_files=dict(), @@ -94,4 +96,3 @@ def test_Randomise_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py b/nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py index b064dd1e51..0f252d5d61 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py +++ b/nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Reorient2Std + def test_Reorient2Std_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -28,6 +29,7 @@ def test_Reorient2Std_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Reorient2Std_outputs(): output_map = dict(out_file=dict(), ) @@ -36,4 +38,3 @@ def test_Reorient2Std_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_RobustFOV.py b/nipype/interfaces/fsl/tests/test_auto_RobustFOV.py index 4b75cef50c..d28c8845dd 100644 --- a/nipype/interfaces/fsl/tests/test_auto_RobustFOV.py +++ b/nipype/interfaces/fsl/tests/test_auto_RobustFOV.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import RobustFOV + def test_RobustFOV_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -30,6 +31,7 @@ def test_RobustFOV_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_RobustFOV_outputs(): output_map = dict(out_roi=dict(), ) @@ -38,4 +40,3 @@ def test_RobustFOV_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_SMM.py b/nipype/interfaces/fsl/tests/test_auto_SMM.py index 071d9c2960..b2440eaa7e 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SMM.py +++ b/nipype/interfaces/fsl/tests/test_auto_SMM.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import SMM + def test_SMM_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_SMM_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SMM_outputs(): output_map = dict(activation_p_map=dict(), deactivation_p_map=dict(), @@ -44,4 +46,3 @@ def test_SMM_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_SUSAN.py b/nipype/interfaces/fsl/tests/test_auto_SUSAN.py index e577e1299c..0b813fc31e 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SUSAN.py +++ b/nipype/interfaces/fsl/tests/test_auto_SUSAN.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import SUSAN + def test_SUSAN_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -50,6 +51,7 @@ def test_SUSAN_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SUSAN_outputs(): output_map = dict(smoothed_file=dict(), ) @@ -58,4 +60,3 @@ def test_SUSAN_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_SigLoss.py b/nipype/interfaces/fsl/tests/test_auto_SigLoss.py index 6588a4cfb2..e42dc4ba88 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SigLoss.py +++ b/nipype/interfaces/fsl/tests/test_auto_SigLoss.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import SigLoss + def test_SigLoss_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_SigLoss_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SigLoss_outputs(): output_map = dict(out_file=dict(), ) @@ -41,4 +43,3 @@ def test_SigLoss_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_SliceTimer.py b/nipype/interfaces/fsl/tests/test_auto_SliceTimer.py index 5e4b75cf82..c02b80cf3b 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SliceTimer.py +++ b/nipype/interfaces/fsl/tests/test_auto_SliceTimer.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import SliceTimer + def test_SliceTimer_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -43,6 +44,7 @@ def test_SliceTimer_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SliceTimer_outputs(): output_map = dict(slice_time_corrected_file=dict(), ) @@ -51,4 +53,3 @@ def test_SliceTimer_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_Slicer.py b/nipype/interfaces/fsl/tests/test_auto_Slicer.py index a74470e555..edcaafaa30 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Slicer.py +++ b/nipype/interfaces/fsl/tests/test_auto_Slicer.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Slicer + def test_Slicer_inputs(): input_map = dict(all_axial=dict(argstr='-A', position=10, @@ -84,6 +85,7 @@ def test_Slicer_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Slicer_outputs(): output_map = dict(out_file=dict(), ) @@ -92,4 +94,3 @@ def test_Slicer_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_Smooth.py b/nipype/interfaces/fsl/tests/test_auto_Smooth.py index 6738ae4382..535e31b5dc 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Smooth.py +++ b/nipype/interfaces/fsl/tests/test_auto_Smooth.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Smooth + def test_Smooth_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_Smooth_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Smooth_outputs(): output_map = dict(smoothed_file=dict(), ) @@ -42,4 +44,3 @@ def test_Smooth_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_SmoothEstimate.py b/nipype/interfaces/fsl/tests/test_auto_SmoothEstimate.py index 9e9195bf6b..5c3f8c46b0 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SmoothEstimate.py +++ b/nipype/interfaces/fsl/tests/test_auto_SmoothEstimate.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import SmoothEstimate + def test_SmoothEstimate_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_SmoothEstimate_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SmoothEstimate_outputs(): output_map = dict(dlh=dict(), resels=dict(), @@ -44,4 +46,3 @@ def test_SmoothEstimate_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_SpatialFilter.py b/nipype/interfaces/fsl/tests/test_auto_SpatialFilter.py index 511072850f..ab605fed0b 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SpatialFilter.py +++ b/nipype/interfaces/fsl/tests/test_auto_SpatialFilter.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import SpatialFilter + def test_SpatialFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -54,6 +55,7 @@ def test_SpatialFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SpatialFilter_outputs(): output_map = dict(out_file=dict(), ) @@ -62,4 +64,3 @@ def test_SpatialFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_Split.py b/nipype/interfaces/fsl/tests/test_auto_Split.py index a910fef77e..a7469eca48 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Split.py +++ b/nipype/interfaces/fsl/tests/test_auto_Split.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Split + def test_Split_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_Split_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Split_outputs(): output_map = dict(out_files=dict(), ) @@ -40,4 +42,3 @@ def test_Split_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py b/nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py index 65c93c5be6..60dd31a304 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py +++ b/nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import SwapDimensions + def test_SwapDimensions_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_SwapDimensions_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SwapDimensions_outputs(): output_map = dict(out_file=dict(), ) @@ -40,4 +42,3 @@ def test_SwapDimensions_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_TOPUP.py b/nipype/interfaces/fsl/tests/test_auto_TOPUP.py index 2edb5ff1db..3e097b26ab 100644 --- a/nipype/interfaces/fsl/tests/test_auto_TOPUP.py +++ b/nipype/interfaces/fsl/tests/test_auto_TOPUP.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..epi import TOPUP + def test_TOPUP_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -89,6 +90,7 @@ def test_TOPUP_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TOPUP_outputs(): output_map = dict(out_corrected=dict(), out_enc_file=dict(), @@ -102,4 +104,3 @@ def test_TOPUP_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py b/nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py index d30e31801f..049af8bd52 100644 --- a/nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py +++ b/nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import TemporalFilter + def test_TemporalFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -47,6 +48,7 @@ def test_TemporalFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TemporalFilter_outputs(): output_map = dict(out_file=dict(), ) @@ -55,4 +57,3 @@ def test_TemporalFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_Threshold.py b/nipype/interfaces/fsl/tests/test_auto_Threshold.py index f2424ca25c..dfaa3594bb 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Threshold.py +++ b/nipype/interfaces/fsl/tests/test_auto_Threshold.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import Threshold + def test_Threshold_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -48,6 +49,7 @@ def test_Threshold_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Threshold_outputs(): output_map = dict(out_file=dict(), ) @@ -56,4 +58,3 @@ def test_Threshold_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py b/nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py index f6dc2991a6..3808504b9d 100644 --- a/nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py +++ b/nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import TractSkeleton + def test_TractSkeleton_inputs(): input_map = dict(alt_data_file=dict(argstr='-a %s', ), @@ -42,6 +43,7 @@ def test_TractSkeleton_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TractSkeleton_outputs(): output_map = dict(projected_data=dict(), skeleton_file=dict(), @@ -51,4 +53,3 @@ def test_TractSkeleton_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py b/nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py index d35f8e4738..9bc209e532 100644 --- a/nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py +++ b/nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..maths import UnaryMaths + def test_UnaryMaths_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -43,6 +44,7 @@ def test_UnaryMaths_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_UnaryMaths_outputs(): output_map = dict(out_file=dict(), ) @@ -51,4 +53,3 @@ def test_UnaryMaths_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_VecReg.py b/nipype/interfaces/fsl/tests/test_auto_VecReg.py index 2e129bef92..55c84c1164 100644 --- a/nipype/interfaces/fsl/tests/test_auto_VecReg.py +++ b/nipype/interfaces/fsl/tests/test_auto_VecReg.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import VecReg + def test_VecReg_inputs(): input_map = dict(affine_mat=dict(argstr='-t %s', ), @@ -45,6 +46,7 @@ def test_VecReg_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_VecReg_outputs(): output_map = dict(out_file=dict(), ) @@ -53,4 +55,3 @@ def test_VecReg_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_WarpPoints.py b/nipype/interfaces/fsl/tests/test_auto_WarpPoints.py index 553c63665b..984b3f77a1 100644 --- a/nipype/interfaces/fsl/tests/test_auto_WarpPoints.py +++ b/nipype/interfaces/fsl/tests/test_auto_WarpPoints.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import WarpPoints + def test_WarpPoints_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -46,6 +47,7 @@ def test_WarpPoints_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_WarpPoints_outputs(): output_map = dict(out_file=dict(), ) @@ -54,4 +56,3 @@ def test_WarpPoints_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py b/nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py index f8f7941081..f6ecd09f2e 100644 --- a/nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py +++ b/nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import WarpPointsToStd + def test_WarpPointsToStd_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -48,6 +49,7 @@ def test_WarpPointsToStd_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_WarpPointsToStd_outputs(): output_map = dict(out_file=dict(), ) @@ -56,4 +58,3 @@ def test_WarpPointsToStd_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_WarpUtils.py b/nipype/interfaces/fsl/tests/test_auto_WarpUtils.py index eea3ada6aa..065e2b455b 100644 --- a/nipype/interfaces/fsl/tests/test_auto_WarpUtils.py +++ b/nipype/interfaces/fsl/tests/test_auto_WarpUtils.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import WarpUtils + def test_WarpUtils_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -45,6 +46,7 @@ def test_WarpUtils_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_WarpUtils_outputs(): output_map = dict(out_file=dict(), out_jacobian=dict(), @@ -54,4 +56,3 @@ def test_WarpUtils_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_XFibres4.py b/nipype/interfaces/fsl/tests/test_auto_XFibres4.py index a5733fd892..5fa46bb954 100644 --- a/nipype/interfaces/fsl/tests/test_auto_XFibres4.py +++ b/nipype/interfaces/fsl/tests/test_auto_XFibres4.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import XFibres4 + def test_XFibres4_inputs(): input_map = dict(all_ard=dict(argstr='--allard', xor=('no_ard', 'all_ard'), @@ -71,6 +72,7 @@ def test_XFibres4_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_XFibres4_outputs(): output_map = dict(dyads=dict(), fsamples=dict(), @@ -85,4 +87,3 @@ def test_XFibres4_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/fsl/tests/test_auto_XFibres5.py b/nipype/interfaces/fsl/tests/test_auto_XFibres5.py index 0e2b34d39d..f877d894e5 100644 --- a/nipype/interfaces/fsl/tests/test_auto_XFibres5.py +++ b/nipype/interfaces/fsl/tests/test_auto_XFibres5.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..dti import XFibres5 + def test_XFibres5_inputs(): input_map = dict(all_ard=dict(argstr='--allard', xor=('no_ard', 'all_ard'), @@ -84,6 +85,7 @@ def test_XFibres5_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_XFibres5_outputs(): output_map = dict(dyads=dict(), fsamples=dict(), @@ -99,4 +101,3 @@ def test_XFibres5_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_JistBrainMgdmSegmentation.py b/nipype/interfaces/mipav/tests/test_auto_JistBrainMgdmSegmentation.py index c4a08fa091..e326a579a2 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistBrainMgdmSegmentation.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistBrainMgdmSegmentation.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import JistBrainMgdmSegmentation + def test_JistBrainMgdmSegmentation_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -73,6 +74,7 @@ def test_JistBrainMgdmSegmentation_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JistBrainMgdmSegmentation_outputs(): output_map = dict(outLevelset=dict(), outPosterior2=dict(), @@ -84,4 +86,3 @@ def test_JistBrainMgdmSegmentation_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageDuraEstimation.py b/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageDuraEstimation.py index 13a3154a57..d8fab93f50 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageDuraEstimation.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageDuraEstimation.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import JistBrainMp2rageDuraEstimation + def test_JistBrainMp2rageDuraEstimation_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_JistBrainMp2rageDuraEstimation_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JistBrainMp2rageDuraEstimation_outputs(): output_map = dict(outDura=dict(), ) @@ -48,4 +50,3 @@ def test_JistBrainMp2rageDuraEstimation_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageSkullStripping.py b/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageSkullStripping.py index 9535b7d171..12b3232fa7 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageSkullStripping.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageSkullStripping.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import JistBrainMp2rageSkullStripping + def test_JistBrainMp2rageSkullStripping_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -51,6 +52,7 @@ def test_JistBrainMp2rageSkullStripping_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JistBrainMp2rageSkullStripping_outputs(): output_map = dict(outBrain=dict(), outMasked=dict(), @@ -62,4 +64,3 @@ def test_JistBrainMp2rageSkullStripping_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_JistBrainPartialVolumeFilter.py b/nipype/interfaces/mipav/tests/test_auto_JistBrainPartialVolumeFilter.py index 487bb25bfb..659b4672b0 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistBrainPartialVolumeFilter.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistBrainPartialVolumeFilter.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import JistBrainPartialVolumeFilter + def test_JistBrainPartialVolumeFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -38,6 +39,7 @@ def test_JistBrainPartialVolumeFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JistBrainPartialVolumeFilter_outputs(): output_map = dict(outPartial=dict(), ) @@ -46,4 +48,3 @@ def test_JistBrainPartialVolumeFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_JistCortexSurfaceMeshInflation.py b/nipype/interfaces/mipav/tests/test_auto_JistCortexSurfaceMeshInflation.py index caec86fbf4..c4bf2b4c64 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistCortexSurfaceMeshInflation.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistCortexSurfaceMeshInflation.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import JistCortexSurfaceMeshInflation + def test_JistCortexSurfaceMeshInflation_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -49,6 +50,7 @@ def test_JistCortexSurfaceMeshInflation_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JistCortexSurfaceMeshInflation_outputs(): output_map = dict(outInflated=dict(), outOriginal=dict(), @@ -58,4 +60,3 @@ def test_JistCortexSurfaceMeshInflation_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_JistIntensityMp2rageMasking.py b/nipype/interfaces/mipav/tests/test_auto_JistIntensityMp2rageMasking.py index 9ad0e07868..e5eb472c0f 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistIntensityMp2rageMasking.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistIntensityMp2rageMasking.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import JistIntensityMp2rageMasking + def test_JistIntensityMp2rageMasking_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -53,6 +54,7 @@ def test_JistIntensityMp2rageMasking_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JistIntensityMp2rageMasking_outputs(): output_map = dict(outMasked=dict(), outMasked2=dict(), @@ -64,4 +66,3 @@ def test_JistIntensityMp2rageMasking_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileCalculator.py b/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileCalculator.py index 360bc1cb9a..c00adac81c 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileCalculator.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileCalculator.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import JistLaminarProfileCalculator + def test_JistLaminarProfileCalculator_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -38,6 +39,7 @@ def test_JistLaminarProfileCalculator_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JistLaminarProfileCalculator_outputs(): output_map = dict(outResult=dict(), ) @@ -46,4 +48,3 @@ def test_JistLaminarProfileCalculator_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileGeometry.py b/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileGeometry.py index 91612a6106..b251f594db 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileGeometry.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileGeometry.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import JistLaminarProfileGeometry + def test_JistLaminarProfileGeometry_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -42,6 +43,7 @@ def test_JistLaminarProfileGeometry_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JistLaminarProfileGeometry_outputs(): output_map = dict(outResult=dict(), ) @@ -50,4 +52,3 @@ def test_JistLaminarProfileGeometry_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileSampling.py b/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileSampling.py index b33903f1e8..b9d5a067ec 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileSampling.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileSampling.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import JistLaminarProfileSampling + def test_JistLaminarProfileSampling_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -41,6 +42,7 @@ def test_JistLaminarProfileSampling_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JistLaminarProfileSampling_outputs(): output_map = dict(outProfile2=dict(), outProfilemapped=dict(), @@ -50,4 +52,3 @@ def test_JistLaminarProfileSampling_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_JistLaminarROIAveraging.py b/nipype/interfaces/mipav/tests/test_auto_JistLaminarROIAveraging.py index a2f684e95d..2c22ad0e70 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistLaminarROIAveraging.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistLaminarROIAveraging.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import JistLaminarROIAveraging + def test_JistLaminarROIAveraging_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_JistLaminarROIAveraging_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JistLaminarROIAveraging_outputs(): output_map = dict(outROI3=dict(), ) @@ -48,4 +50,3 @@ def test_JistLaminarROIAveraging_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_JistLaminarVolumetricLayering.py b/nipype/interfaces/mipav/tests/test_auto_JistLaminarVolumetricLayering.py index 4ad3f30476..40ff811855 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistLaminarVolumetricLayering.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistLaminarVolumetricLayering.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import JistLaminarVolumetricLayering + def test_JistLaminarVolumetricLayering_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -60,6 +61,7 @@ def test_JistLaminarVolumetricLayering_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JistLaminarVolumetricLayering_outputs(): output_map = dict(outContinuous=dict(), outDiscrete=dict(), @@ -70,4 +72,3 @@ def test_JistLaminarVolumetricLayering_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmImageCalculator.py b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmImageCalculator.py index 6252555653..802669247f 100644 --- a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmImageCalculator.py +++ b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmImageCalculator.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import MedicAlgorithmImageCalculator + def test_MedicAlgorithmImageCalculator_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -38,6 +39,7 @@ def test_MedicAlgorithmImageCalculator_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MedicAlgorithmImageCalculator_outputs(): output_map = dict(outResult=dict(), ) @@ -46,4 +48,3 @@ def test_MedicAlgorithmImageCalculator_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmLesionToads.py b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmLesionToads.py index 7b03410be4..232d6a1362 100644 --- a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmLesionToads.py +++ b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmLesionToads.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import MedicAlgorithmLesionToads + def test_MedicAlgorithmLesionToads_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -98,6 +99,7 @@ def test_MedicAlgorithmLesionToads_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MedicAlgorithmLesionToads_outputs(): output_map = dict(outCortical=dict(), outFilled=dict(), @@ -114,4 +116,3 @@ def test_MedicAlgorithmLesionToads_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmMipavReorient.py b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmMipavReorient.py index b288aabc2f..a9e43b3b04 100644 --- a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmMipavReorient.py +++ b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmMipavReorient.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import MedicAlgorithmMipavReorient + def test_MedicAlgorithmMipavReorient_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -51,6 +52,7 @@ def test_MedicAlgorithmMipavReorient_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MedicAlgorithmMipavReorient_outputs(): output_map = dict() outputs = MedicAlgorithmMipavReorient.output_spec() @@ -58,4 +60,3 @@ def test_MedicAlgorithmMipavReorient_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmN3.py b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmN3.py index 344e6924bb..58b3daa96f 100644 --- a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmN3.py +++ b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmN3.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import MedicAlgorithmN3 + def test_MedicAlgorithmN3_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -53,6 +54,7 @@ def test_MedicAlgorithmN3_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MedicAlgorithmN3_outputs(): output_map = dict(outInhomogeneity=dict(), outInhomogeneity2=dict(), @@ -62,4 +64,3 @@ def test_MedicAlgorithmN3_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmSPECTRE2010.py b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmSPECTRE2010.py index f3edf74136..c8e005123b 100644 --- a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmSPECTRE2010.py +++ b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmSPECTRE2010.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import MedicAlgorithmSPECTRE2010 + def test_MedicAlgorithmSPECTRE2010_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -124,6 +125,7 @@ def test_MedicAlgorithmSPECTRE2010_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MedicAlgorithmSPECTRE2010_outputs(): output_map = dict(outFANTASM=dict(), outMask=dict(), @@ -140,4 +142,3 @@ def test_MedicAlgorithmSPECTRE2010_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmThresholdToBinaryMask.py b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmThresholdToBinaryMask.py index 95db54b4c6..f472c7043f 100644 --- a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmThresholdToBinaryMask.py +++ b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmThresholdToBinaryMask.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import MedicAlgorithmThresholdToBinaryMask + def test_MedicAlgorithmThresholdToBinaryMask_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -41,6 +42,7 @@ def test_MedicAlgorithmThresholdToBinaryMask_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MedicAlgorithmThresholdToBinaryMask_outputs(): output_map = dict() outputs = MedicAlgorithmThresholdToBinaryMask.output_spec() @@ -48,4 +50,3 @@ def test_MedicAlgorithmThresholdToBinaryMask_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mipav/tests/test_auto_RandomVol.py b/nipype/interfaces/mipav/tests/test_auto_RandomVol.py index 0fd32c6296..be6839e209 100644 --- a/nipype/interfaces/mipav/tests/test_auto_RandomVol.py +++ b/nipype/interfaces/mipav/tests/test_auto_RandomVol.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..developer import RandomVol + def test_RandomVol_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -50,6 +51,7 @@ def test_RandomVol_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_RandomVol_outputs(): output_map = dict(outRand1=dict(), ) @@ -58,4 +60,3 @@ def test_RandomVol_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mne/tests/test_auto_WatershedBEM.py b/nipype/interfaces/mne/tests/test_auto_WatershedBEM.py index 745cc8b99a..28c42e1c6d 100644 --- a/nipype/interfaces/mne/tests/test_auto_WatershedBEM.py +++ b/nipype/interfaces/mne/tests/test_auto_WatershedBEM.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..base import WatershedBEM + def test_WatershedBEM_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_WatershedBEM_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_WatershedBEM_outputs(): output_map = dict(brain_surface=dict(loc='bem/watershed', ), @@ -56,4 +58,3 @@ def test_WatershedBEM_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_ConstrainedSphericalDeconvolution.py b/nipype/interfaces/mrtrix/tests/test_auto_ConstrainedSphericalDeconvolution.py index 2261a9c887..4bf97e42f7 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_ConstrainedSphericalDeconvolution.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_ConstrainedSphericalDeconvolution.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tensors import ConstrainedSphericalDeconvolution + def test_ConstrainedSphericalDeconvolution_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -57,6 +58,7 @@ def test_ConstrainedSphericalDeconvolution_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ConstrainedSphericalDeconvolution_outputs(): output_map = dict(spherical_harmonics_image=dict(), ) @@ -65,4 +67,3 @@ def test_ConstrainedSphericalDeconvolution_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_DWI2SphericalHarmonicsImage.py b/nipype/interfaces/mrtrix/tests/test_auto_DWI2SphericalHarmonicsImage.py index 86d9d6259d..28d3c97831 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_DWI2SphericalHarmonicsImage.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_DWI2SphericalHarmonicsImage.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tensors import DWI2SphericalHarmonicsImage + def test_DWI2SphericalHarmonicsImage_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -37,6 +38,7 @@ def test_DWI2SphericalHarmonicsImage_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DWI2SphericalHarmonicsImage_outputs(): output_map = dict(spherical_harmonics_image=dict(), ) @@ -45,4 +47,3 @@ def test_DWI2SphericalHarmonicsImage_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_DWI2Tensor.py b/nipype/interfaces/mrtrix/tests/test_auto_DWI2Tensor.py index a8e0e1f3d8..1062277c13 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_DWI2Tensor.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_DWI2Tensor.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import DWI2Tensor + def test_DWI2Tensor_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -47,6 +48,7 @@ def test_DWI2Tensor_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DWI2Tensor_outputs(): output_map = dict(tensor=dict(), ) @@ -55,4 +57,3 @@ def test_DWI2Tensor_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_DiffusionTensorStreamlineTrack.py b/nipype/interfaces/mrtrix/tests/test_auto_DiffusionTensorStreamlineTrack.py index 3cb6d42bc1..42cb14de9f 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_DiffusionTensorStreamlineTrack.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_DiffusionTensorStreamlineTrack.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tracking import DiffusionTensorStreamlineTrack + def test_DiffusionTensorStreamlineTrack_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -107,6 +108,7 @@ def test_DiffusionTensorStreamlineTrack_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DiffusionTensorStreamlineTrack_outputs(): output_map = dict(tracked=dict(), ) @@ -115,4 +117,3 @@ def test_DiffusionTensorStreamlineTrack_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Directions2Amplitude.py b/nipype/interfaces/mrtrix/tests/test_auto_Directions2Amplitude.py index 5fedacb20b..1fb1d8d764 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Directions2Amplitude.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Directions2Amplitude.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tensors import Directions2Amplitude + def test_Directions2Amplitude_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -44,6 +45,7 @@ def test_Directions2Amplitude_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Directions2Amplitude_outputs(): output_map = dict(out_file=dict(), ) @@ -52,4 +54,3 @@ def test_Directions2Amplitude_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Erode.py b/nipype/interfaces/mrtrix/tests/test_auto_Erode.py index 3a159ae5e6..3161e6e0fd 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Erode.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Erode.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Erode + def test_Erode_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -39,6 +40,7 @@ def test_Erode_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Erode_outputs(): output_map = dict(out_file=dict(), ) @@ -47,4 +49,3 @@ def test_Erode_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_EstimateResponseForSH.py b/nipype/interfaces/mrtrix/tests/test_auto_EstimateResponseForSH.py index 5b595183bc..ff6a638f14 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_EstimateResponseForSH.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_EstimateResponseForSH.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tensors import EstimateResponseForSH + def test_EstimateResponseForSH_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -44,6 +45,7 @@ def test_EstimateResponseForSH_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_EstimateResponseForSH_outputs(): output_map = dict(response=dict(), ) @@ -52,4 +54,3 @@ def test_EstimateResponseForSH_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_FSL2MRTrix.py b/nipype/interfaces/mrtrix/tests/test_auto_FSL2MRTrix.py index 46a63b32c8..03cc06b2ed 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_FSL2MRTrix.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_FSL2MRTrix.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tensors import FSL2MRTrix + def test_FSL2MRTrix_inputs(): input_map = dict(bval_file=dict(mandatory=True, ), @@ -22,6 +23,7 @@ def test_FSL2MRTrix_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FSL2MRTrix_outputs(): output_map = dict(encoding_file=dict(), ) @@ -30,4 +32,3 @@ def test_FSL2MRTrix_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_FilterTracks.py b/nipype/interfaces/mrtrix/tests/test_auto_FilterTracks.py index 1947787160..099d08c2de 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_FilterTracks.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_FilterTracks.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tracking import FilterTracks + def test_FilterTracks_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -61,6 +62,7 @@ def test_FilterTracks_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FilterTracks_outputs(): output_map = dict(out_file=dict(), ) @@ -69,4 +71,3 @@ def test_FilterTracks_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_FindShPeaks.py b/nipype/interfaces/mrtrix/tests/test_auto_FindShPeaks.py index 37a82e7433..d4776cb4b3 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_FindShPeaks.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_FindShPeaks.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tensors import FindShPeaks + def test_FindShPeaks_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -50,6 +51,7 @@ def test_FindShPeaks_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FindShPeaks_outputs(): output_map = dict(out_file=dict(), ) @@ -58,4 +60,3 @@ def test_FindShPeaks_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_GenerateDirections.py b/nipype/interfaces/mrtrix/tests/test_auto_GenerateDirections.py index ccd0fdf3f3..bd54f78fb3 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_GenerateDirections.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_GenerateDirections.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tensors import GenerateDirections + def test_GenerateDirections_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_GenerateDirections_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GenerateDirections_outputs(): output_map = dict(out_file=dict(), ) @@ -48,4 +50,3 @@ def test_GenerateDirections_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_GenerateWhiteMatterMask.py b/nipype/interfaces/mrtrix/tests/test_auto_GenerateWhiteMatterMask.py index b4c2b7fdda..909015a608 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_GenerateWhiteMatterMask.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_GenerateWhiteMatterMask.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import GenerateWhiteMatterMask + def test_GenerateWhiteMatterMask_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -38,6 +39,7 @@ def test_GenerateWhiteMatterMask_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GenerateWhiteMatterMask_outputs(): output_map = dict(WMprobabilitymap=dict(), ) @@ -46,4 +48,3 @@ def test_GenerateWhiteMatterMask_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_MRConvert.py b/nipype/interfaces/mrtrix/tests/test_auto_MRConvert.py index 87304f7e64..75cb4ff985 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_MRConvert.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_MRConvert.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import MRConvert + def test_MRConvert_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -62,6 +63,7 @@ def test_MRConvert_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MRConvert_outputs(): output_map = dict(converted=dict(), ) @@ -70,4 +72,3 @@ def test_MRConvert_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_MRMultiply.py b/nipype/interfaces/mrtrix/tests/test_auto_MRMultiply.py index edd6fd187e..4c76a6f96c 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_MRMultiply.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_MRMultiply.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import MRMultiply + def test_MRMultiply_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_MRMultiply_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MRMultiply_outputs(): output_map = dict(out_file=dict(), ) @@ -42,4 +44,3 @@ def test_MRMultiply_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_MRTransform.py b/nipype/interfaces/mrtrix/tests/test_auto_MRTransform.py index 1786a3c305..0376e9b4e1 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_MRTransform.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_MRTransform.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import MRTransform + def test_MRTransform_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -52,6 +53,7 @@ def test_MRTransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MRTransform_outputs(): output_map = dict(out_file=dict(), ) @@ -60,4 +62,3 @@ def test_MRTransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_MRTrix2TrackVis.py b/nipype/interfaces/mrtrix/tests/test_auto_MRTrix2TrackVis.py index 57318ad01b..d7da413c92 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_MRTrix2TrackVis.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_MRTrix2TrackVis.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..convert import MRTrix2TrackVis + def test_MRTrix2TrackVis_inputs(): input_map = dict(image_file=dict(), in_file=dict(mandatory=True, @@ -18,6 +19,7 @@ def test_MRTrix2TrackVis_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MRTrix2TrackVis_outputs(): output_map = dict(out_file=dict(), ) @@ -26,4 +28,3 @@ def test_MRTrix2TrackVis_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_MRTrixInfo.py b/nipype/interfaces/mrtrix/tests/test_auto_MRTrixInfo.py index 321c5bac12..73671df40c 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_MRTrixInfo.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_MRTrixInfo.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import MRTrixInfo + def test_MRTrixInfo_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -24,6 +25,7 @@ def test_MRTrixInfo_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MRTrixInfo_outputs(): output_map = dict() outputs = MRTrixInfo.output_spec() @@ -31,4 +33,3 @@ def test_MRTrixInfo_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_MRTrixViewer.py b/nipype/interfaces/mrtrix/tests/test_auto_MRTrixViewer.py index 783dc90bcb..d0e99f2348 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_MRTrixViewer.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_MRTrixViewer.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import MRTrixViewer + def test_MRTrixViewer_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -30,6 +31,7 @@ def test_MRTrixViewer_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MRTrixViewer_outputs(): output_map = dict() outputs = MRTrixViewer.output_spec() @@ -37,4 +39,3 @@ def test_MRTrixViewer_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_MedianFilter3D.py b/nipype/interfaces/mrtrix/tests/test_auto_MedianFilter3D.py index 670a88c038..7010acfda5 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_MedianFilter3D.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_MedianFilter3D.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import MedianFilter3D + def test_MedianFilter3D_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_MedianFilter3D_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MedianFilter3D_outputs(): output_map = dict(out_file=dict(), ) @@ -42,4 +44,3 @@ def test_MedianFilter3D_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_ProbabilisticSphericallyDeconvolutedStreamlineTrack.py b/nipype/interfaces/mrtrix/tests/test_auto_ProbabilisticSphericallyDeconvolutedStreamlineTrack.py index 9bb78f5ff2..dfb1b57ddc 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_ProbabilisticSphericallyDeconvolutedStreamlineTrack.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_ProbabilisticSphericallyDeconvolutedStreamlineTrack.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tracking import ProbabilisticSphericallyDeconvolutedStreamlineTrack + def test_ProbabilisticSphericallyDeconvolutedStreamlineTrack_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -105,6 +106,7 @@ def test_ProbabilisticSphericallyDeconvolutedStreamlineTrack_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ProbabilisticSphericallyDeconvolutedStreamlineTrack_outputs(): output_map = dict(tracked=dict(), ) @@ -113,4 +115,3 @@ def test_ProbabilisticSphericallyDeconvolutedStreamlineTrack_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_SphericallyDeconvolutedStreamlineTrack.py b/nipype/interfaces/mrtrix/tests/test_auto_SphericallyDeconvolutedStreamlineTrack.py index 74085472c5..2180af33eb 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_SphericallyDeconvolutedStreamlineTrack.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_SphericallyDeconvolutedStreamlineTrack.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tracking import SphericallyDeconvolutedStreamlineTrack + def test_SphericallyDeconvolutedStreamlineTrack_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -103,6 +104,7 @@ def test_SphericallyDeconvolutedStreamlineTrack_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SphericallyDeconvolutedStreamlineTrack_outputs(): output_map = dict(tracked=dict(), ) @@ -111,4 +113,3 @@ def test_SphericallyDeconvolutedStreamlineTrack_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_StreamlineTrack.py b/nipype/interfaces/mrtrix/tests/test_auto_StreamlineTrack.py index 9c4e24c857..86f3607f34 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_StreamlineTrack.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_StreamlineTrack.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tracking import StreamlineTrack + def test_StreamlineTrack_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -103,6 +104,7 @@ def test_StreamlineTrack_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_StreamlineTrack_outputs(): output_map = dict(tracked=dict(), ) @@ -111,4 +113,3 @@ def test_StreamlineTrack_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Tensor2ApparentDiffusion.py b/nipype/interfaces/mrtrix/tests/test_auto_Tensor2ApparentDiffusion.py index 7c23f3234a..c7bd91a610 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Tensor2ApparentDiffusion.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Tensor2ApparentDiffusion.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Tensor2ApparentDiffusion + def test_Tensor2ApparentDiffusion_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_Tensor2ApparentDiffusion_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Tensor2ApparentDiffusion_outputs(): output_map = dict(ADC=dict(), ) @@ -42,4 +44,3 @@ def test_Tensor2ApparentDiffusion_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Tensor2FractionalAnisotropy.py b/nipype/interfaces/mrtrix/tests/test_auto_Tensor2FractionalAnisotropy.py index 64b71e3f3c..07a9fadc2f 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Tensor2FractionalAnisotropy.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Tensor2FractionalAnisotropy.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Tensor2FractionalAnisotropy + def test_Tensor2FractionalAnisotropy_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_Tensor2FractionalAnisotropy_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Tensor2FractionalAnisotropy_outputs(): output_map = dict(FA=dict(), ) @@ -42,4 +44,3 @@ def test_Tensor2FractionalAnisotropy_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Tensor2Vector.py b/nipype/interfaces/mrtrix/tests/test_auto_Tensor2Vector.py index 06dec919ca..cc84f35f3a 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Tensor2Vector.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Tensor2Vector.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Tensor2Vector + def test_Tensor2Vector_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_Tensor2Vector_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Tensor2Vector_outputs(): output_map = dict(vector=dict(), ) @@ -42,4 +44,3 @@ def test_Tensor2Vector_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Threshold.py b/nipype/interfaces/mrtrix/tests/test_auto_Threshold.py index daebdfbadf..c45e38f714 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Threshold.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Threshold.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Threshold + def test_Threshold_inputs(): input_map = dict(absolute_threshold_value=dict(argstr='-abs %s', ), @@ -44,6 +45,7 @@ def test_Threshold_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Threshold_outputs(): output_map = dict(out_file=dict(), ) @@ -52,4 +54,3 @@ def test_Threshold_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Tracks2Prob.py b/nipype/interfaces/mrtrix/tests/test_auto_Tracks2Prob.py index 2c91ba9052..5460b7b18e 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Tracks2Prob.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Tracks2Prob.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tracking import Tracks2Prob + def test_Tracks2Prob_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -48,6 +49,7 @@ def test_Tracks2Prob_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Tracks2Prob_outputs(): output_map = dict(tract_image=dict(), ) @@ -56,4 +58,3 @@ def test_Tracks2Prob_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_ACTPrepareFSL.py b/nipype/interfaces/mrtrix3/tests/test_auto_ACTPrepareFSL.py index 9661a59842..45a1a9fef0 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_ACTPrepareFSL.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_ACTPrepareFSL.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import ACTPrepareFSL + def test_ACTPrepareFSL_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_ACTPrepareFSL_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ACTPrepareFSL_outputs(): output_map = dict(out_file=dict(), ) @@ -37,4 +39,3 @@ def test_ACTPrepareFSL_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_BrainMask.py b/nipype/interfaces/mrtrix3/tests/test_auto_BrainMask.py index 5e6713290d..7581fe6059 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_BrainMask.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_BrainMask.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import BrainMask + def test_BrainMask_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -41,6 +42,7 @@ def test_BrainMask_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BrainMask_outputs(): output_map = dict(out_file=dict(), ) @@ -49,4 +51,3 @@ def test_BrainMask_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_BuildConnectome.py b/nipype/interfaces/mrtrix3/tests/test_auto_BuildConnectome.py index 24dd8d2d62..e4b97f4381 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_BuildConnectome.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_BuildConnectome.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..connectivity import BuildConnectome + def test_BuildConnectome_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -53,6 +54,7 @@ def test_BuildConnectome_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BuildConnectome_outputs(): output_map = dict(out_file=dict(), ) @@ -61,4 +63,3 @@ def test_BuildConnectome_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_ComputeTDI.py b/nipype/interfaces/mrtrix3/tests/test_auto_ComputeTDI.py index 9112ece997..ef2fec18a5 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_ComputeTDI.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_ComputeTDI.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ComputeTDI + def test_ComputeTDI_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -64,6 +65,7 @@ def test_ComputeTDI_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ComputeTDI_outputs(): output_map = dict(out_file=dict(), ) @@ -72,4 +74,3 @@ def test_ComputeTDI_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_EstimateFOD.py b/nipype/interfaces/mrtrix3/tests/test_auto_EstimateFOD.py index 142283a10f..1f8b434843 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_EstimateFOD.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_EstimateFOD.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..reconst import EstimateFOD + def test_EstimateFOD_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -62,6 +63,7 @@ def test_EstimateFOD_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_EstimateFOD_outputs(): output_map = dict(out_file=dict(), ) @@ -70,4 +72,3 @@ def test_EstimateFOD_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_FitTensor.py b/nipype/interfaces/mrtrix3/tests/test_auto_FitTensor.py index 7102d75fbf..3d926e3bd3 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_FitTensor.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_FitTensor.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..reconst import FitTensor + def test_FitTensor_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -47,6 +48,7 @@ def test_FitTensor_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FitTensor_outputs(): output_map = dict(out_file=dict(), ) @@ -55,4 +57,3 @@ def test_FitTensor_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_Generate5tt.py b/nipype/interfaces/mrtrix3/tests/test_auto_Generate5tt.py index 417a0b487f..b06b6362ab 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_Generate5tt.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_Generate5tt.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Generate5tt + def test_Generate5tt_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_Generate5tt_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Generate5tt_outputs(): output_map = dict(out_file=dict(), ) @@ -40,4 +42,3 @@ def test_Generate5tt_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_LabelConfig.py b/nipype/interfaces/mrtrix3/tests/test_auto_LabelConfig.py index 895da00071..4f57c6246d 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_LabelConfig.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_LabelConfig.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..connectivity import LabelConfig + def test_LabelConfig_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -45,6 +46,7 @@ def test_LabelConfig_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_LabelConfig_outputs(): output_map = dict(out_file=dict(), ) @@ -53,4 +55,3 @@ def test_LabelConfig_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_MRTrix3Base.py b/nipype/interfaces/mrtrix3/tests/test_auto_MRTrix3Base.py index 7a82b5f98d..c03da343e2 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_MRTrix3Base.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_MRTrix3Base.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..base import MRTrix3Base + def test_MRTrix3Base_inputs(): input_map = dict(args=dict(argstr='%s', ), diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_Mesh2PVE.py b/nipype/interfaces/mrtrix3/tests/test_auto_Mesh2PVE.py index 5c4ef045aa..781d8b2e98 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_Mesh2PVE.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_Mesh2PVE.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Mesh2PVE + def test_Mesh2PVE_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -35,6 +36,7 @@ def test_Mesh2PVE_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Mesh2PVE_outputs(): output_map = dict(out_file=dict(), ) @@ -43,4 +45,3 @@ def test_Mesh2PVE_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_ReplaceFSwithFIRST.py b/nipype/interfaces/mrtrix3/tests/test_auto_ReplaceFSwithFIRST.py index a32cc65902..cb33fda95b 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_ReplaceFSwithFIRST.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_ReplaceFSwithFIRST.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import ReplaceFSwithFIRST + def test_ReplaceFSwithFIRST_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -36,6 +37,7 @@ def test_ReplaceFSwithFIRST_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ReplaceFSwithFIRST_outputs(): output_map = dict(out_file=dict(), ) @@ -44,4 +46,3 @@ def test_ReplaceFSwithFIRST_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_ResponseSD.py b/nipype/interfaces/mrtrix3/tests/test_auto_ResponseSD.py index 628981abb3..cb78159156 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_ResponseSD.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_ResponseSD.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import ResponseSD + def test_ResponseSD_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -62,6 +63,7 @@ def test_ResponseSD_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ResponseSD_outputs(): output_map = dict(out_file=dict(), out_sf=dict(), @@ -71,4 +73,3 @@ def test_ResponseSD_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_TCK2VTK.py b/nipype/interfaces/mrtrix3/tests/test_auto_TCK2VTK.py index aa3b05036c..d80b749fee 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_TCK2VTK.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_TCK2VTK.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import TCK2VTK + def test_TCK2VTK_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -35,6 +36,7 @@ def test_TCK2VTK_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TCK2VTK_outputs(): output_map = dict(out_file=dict(), ) @@ -43,4 +45,3 @@ def test_TCK2VTK_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_TensorMetrics.py b/nipype/interfaces/mrtrix3/tests/test_auto_TensorMetrics.py index 1dd22ef0aa..6be2bccab0 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_TensorMetrics.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_TensorMetrics.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import TensorMetrics + def test_TensorMetrics_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -39,6 +40,7 @@ def test_TensorMetrics_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TensorMetrics_outputs(): output_map = dict(out_adc=dict(), out_eval=dict(), @@ -50,4 +52,3 @@ def test_TensorMetrics_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_Tractography.py b/nipype/interfaces/mrtrix3/tests/test_auto_Tractography.py index 60fae0c3d7..aeaff9b599 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_Tractography.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_Tractography.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..tracking import Tractography + def test_Tractography_inputs(): input_map = dict(act_file=dict(argstr='-act %s', ), @@ -113,6 +114,7 @@ def test_Tractography_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Tractography_outputs(): output_map = dict(out_file=dict(), out_seeds=dict(), @@ -122,4 +124,3 @@ def test_Tractography_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/nipy/tests/test_auto_ComputeMask.py b/nipype/interfaces/nipy/tests/test_auto_ComputeMask.py index 057c1d46f0..607c2b1f9d 100644 --- a/nipype/interfaces/nipy/tests/test_auto_ComputeMask.py +++ b/nipype/interfaces/nipy/tests/test_auto_ComputeMask.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import ComputeMask + def test_ComputeMask_inputs(): input_map = dict(M=dict(), cc=dict(), @@ -19,6 +20,7 @@ def test_ComputeMask_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ComputeMask_outputs(): output_map = dict(brain_mask=dict(), ) @@ -27,4 +29,3 @@ def test_ComputeMask_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/nipy/tests/test_auto_EstimateContrast.py b/nipype/interfaces/nipy/tests/test_auto_EstimateContrast.py index f2ed249b8b..61e6d42146 100644 --- a/nipype/interfaces/nipy/tests/test_auto_EstimateContrast.py +++ b/nipype/interfaces/nipy/tests/test_auto_EstimateContrast.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import EstimateContrast + def test_EstimateContrast_inputs(): input_map = dict(axis=dict(mandatory=True, ), @@ -30,6 +31,7 @@ def test_EstimateContrast_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_EstimateContrast_outputs(): output_map = dict(p_maps=dict(), stat_maps=dict(), @@ -40,4 +42,3 @@ def test_EstimateContrast_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/nipy/tests/test_auto_FitGLM.py b/nipype/interfaces/nipy/tests/test_auto_FitGLM.py index 7524597ecd..0f15facdb1 100644 --- a/nipype/interfaces/nipy/tests/test_auto_FitGLM.py +++ b/nipype/interfaces/nipy/tests/test_auto_FitGLM.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import FitGLM + def test_FitGLM_inputs(): input_map = dict(TR=dict(mandatory=True, ), @@ -32,6 +33,7 @@ def test_FitGLM_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FitGLM_outputs(): output_map = dict(a=dict(), axis=dict(), @@ -48,4 +50,3 @@ def test_FitGLM_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/nipy/tests/test_auto_FmriRealign4d.py b/nipype/interfaces/nipy/tests/test_auto_FmriRealign4d.py index 605dfc839a..917c1bbe9c 100644 --- a/nipype/interfaces/nipy/tests/test_auto_FmriRealign4d.py +++ b/nipype/interfaces/nipy/tests/test_auto_FmriRealign4d.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import FmriRealign4d + def test_FmriRealign4d_inputs(): input_map = dict(between_loops=dict(usedefault=True, ), @@ -31,6 +32,7 @@ def test_FmriRealign4d_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FmriRealign4d_outputs(): output_map = dict(out_file=dict(), par_file=dict(), @@ -40,4 +42,3 @@ def test_FmriRealign4d_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/nipy/tests/test_auto_Similarity.py b/nipype/interfaces/nipy/tests/test_auto_Similarity.py index 7f39019026..ef370639ce 100644 --- a/nipype/interfaces/nipy/tests/test_auto_Similarity.py +++ b/nipype/interfaces/nipy/tests/test_auto_Similarity.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Similarity + def test_Similarity_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -21,6 +22,7 @@ def test_Similarity_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Similarity_outputs(): output_map = dict(similarity=dict(), ) @@ -29,4 +31,3 @@ def test_Similarity_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/nipy/tests/test_auto_SpaceTimeRealigner.py b/nipype/interfaces/nipy/tests/test_auto_SpaceTimeRealigner.py index e04a9d1b0b..1dc0a5e6df 100644 --- a/nipype/interfaces/nipy/tests/test_auto_SpaceTimeRealigner.py +++ b/nipype/interfaces/nipy/tests/test_auto_SpaceTimeRealigner.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import SpaceTimeRealigner + def test_SpaceTimeRealigner_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -21,6 +22,7 @@ def test_SpaceTimeRealigner_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SpaceTimeRealigner_outputs(): output_map = dict(out_file=dict(), par_file=dict(), @@ -30,4 +32,3 @@ def test_SpaceTimeRealigner_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/nipy/tests/test_auto_Trim.py b/nipype/interfaces/nipy/tests/test_auto_Trim.py index 843774e686..98c8d0dea1 100644 --- a/nipype/interfaces/nipy/tests/test_auto_Trim.py +++ b/nipype/interfaces/nipy/tests/test_auto_Trim.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Trim + def test_Trim_inputs(): input_map = dict(begin_index=dict(usedefault=True, ), @@ -22,6 +23,7 @@ def test_Trim_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Trim_outputs(): output_map = dict(out_file=dict(), ) @@ -30,4 +32,3 @@ def test_Trim_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/nitime/tests/test_auto_CoherenceAnalyzer.py b/nipype/interfaces/nitime/tests/test_auto_CoherenceAnalyzer.py index bda6746b44..2303b647c0 100644 --- a/nipype/interfaces/nitime/tests/test_auto_CoherenceAnalyzer.py +++ b/nipype/interfaces/nitime/tests/test_auto_CoherenceAnalyzer.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..analysis import CoherenceAnalyzer + def test_CoherenceAnalyzer_inputs(): input_map = dict(NFFT=dict(usedefault=True, ), @@ -27,6 +28,7 @@ def test_CoherenceAnalyzer_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CoherenceAnalyzer_outputs(): output_map = dict(coherence_array=dict(), coherence_csv=dict(), @@ -40,4 +42,3 @@ def test_CoherenceAnalyzer_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSPosteriorToContinuousClass.py b/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSPosteriorToContinuousClass.py index 6d989a9493..7fa7c6db0b 100644 --- a/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSPosteriorToContinuousClass.py +++ b/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSPosteriorToContinuousClass.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..classify import BRAINSPosteriorToContinuousClass + def test_BRAINSPosteriorToContinuousClass_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -37,6 +38,7 @@ def test_BRAINSPosteriorToContinuousClass_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSPosteriorToContinuousClass_outputs(): output_map = dict(outputVolume=dict(), ) @@ -45,4 +47,3 @@ def test_BRAINSPosteriorToContinuousClass_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairach.py b/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairach.py index 53363df141..51a08d06e2 100644 --- a/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairach.py +++ b/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairach.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..segmentation import BRAINSTalairach + def test_BRAINSTalairach_inputs(): input_map = dict(AC=dict(argstr='--AC %s', sep=',', @@ -48,6 +49,7 @@ def test_BRAINSTalairach_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSTalairach_outputs(): output_map = dict(outputBox=dict(), outputGrid=dict(), @@ -57,4 +59,3 @@ def test_BRAINSTalairach_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairachMask.py b/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairachMask.py index 6b94a9535e..e4eaa93073 100644 --- a/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairachMask.py +++ b/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairachMask.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..segmentation import BRAINSTalairachMask + def test_BRAINSTalairachMask_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_BRAINSTalairachMask_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSTalairachMask_outputs(): output_map = dict(outputVolume=dict(), ) @@ -41,4 +43,3 @@ def test_BRAINSTalairachMask_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/brains/tests/test_auto_HistogramMatchingFilter.py b/nipype/interfaces/semtools/brains/tests/test_auto_HistogramMatchingFilter.py index 8d360f2e58..41c4fb832f 100644 --- a/nipype/interfaces/semtools/brains/tests/test_auto_HistogramMatchingFilter.py +++ b/nipype/interfaces/semtools/brains/tests/test_auto_HistogramMatchingFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..utilities import HistogramMatchingFilter + def test_HistogramMatchingFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -41,6 +42,7 @@ def test_HistogramMatchingFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_HistogramMatchingFilter_outputs(): output_map = dict(outputVolume=dict(), ) @@ -49,4 +51,3 @@ def test_HistogramMatchingFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/brains/tests/test_auto_SimilarityIndex.py b/nipype/interfaces/semtools/brains/tests/test_auto_SimilarityIndex.py index 2b8f058872..3fbbbace73 100644 --- a/nipype/interfaces/semtools/brains/tests/test_auto_SimilarityIndex.py +++ b/nipype/interfaces/semtools/brains/tests/test_auto_SimilarityIndex.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..segmentation import SimilarityIndex + def test_SimilarityIndex_inputs(): input_map = dict(ANNContinuousVolume=dict(argstr='--ANNContinuousVolume %s', ), @@ -28,6 +29,7 @@ def test_SimilarityIndex_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SimilarityIndex_outputs(): output_map = dict() outputs = SimilarityIndex.output_spec() @@ -35,4 +37,3 @@ def test_SimilarityIndex_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_DWIConvert.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_DWIConvert.py index 4b4d692385..15e293f3aa 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_DWIConvert.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_DWIConvert.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..diffusion import DWIConvert + def test_DWIConvert_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -57,6 +58,7 @@ def test_DWIConvert_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DWIConvert_outputs(): output_map = dict(gradientVectorFile=dict(), outputBValues=dict(), @@ -69,4 +71,3 @@ def test_DWIConvert_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_compareTractInclusion.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_compareTractInclusion.py index 1b8a841b75..1a46be411a 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_compareTractInclusion.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_compareTractInclusion.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import compareTractInclusion + def test_compareTractInclusion_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -36,6 +37,7 @@ def test_compareTractInclusion_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_compareTractInclusion_outputs(): output_map = dict() outputs = compareTractInclusion.output_spec() @@ -43,4 +45,3 @@ def test_compareTractInclusion_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiaverage.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiaverage.py index 4306c604b8..7988994224 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiaverage.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiaverage.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..diffusion import dtiaverage + def test_dtiaverage_inputs(): input_map = dict(DTI_double=dict(argstr='--DTI_double ', ), @@ -29,6 +30,7 @@ def test_dtiaverage_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_dtiaverage_outputs(): output_map = dict(tensor_output=dict(), ) @@ -37,4 +39,3 @@ def test_dtiaverage_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiestim.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiestim.py index 220d80ba9c..1b488807b9 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiestim.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiestim.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..diffusion import dtiestim + def test_dtiestim_inputs(): input_map = dict(B0=dict(argstr='--B0 %s', hash_files=False, @@ -61,6 +62,7 @@ def test_dtiestim_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_dtiestim_outputs(): output_map = dict(B0=dict(), B0_mask_output=dict(), @@ -72,4 +74,3 @@ def test_dtiestim_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiprocess.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiprocess.py index 7d77c6d799..94bd061f75 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiprocess.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiprocess.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..diffusion import dtiprocess + def test_dtiprocess_inputs(): input_map = dict(DTI_double=dict(argstr='--DTI_double ', ), @@ -93,6 +94,7 @@ def test_dtiprocess_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_dtiprocess_outputs(): output_map = dict(RD_output=dict(), color_fa_output=dict(), @@ -115,4 +117,3 @@ def test_dtiprocess_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_extractNrrdVectorIndex.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_extractNrrdVectorIndex.py index 081858b122..79400fea82 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_extractNrrdVectorIndex.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_extractNrrdVectorIndex.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import extractNrrdVectorIndex + def test_extractNrrdVectorIndex_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_extractNrrdVectorIndex_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_extractNrrdVectorIndex_outputs(): output_map = dict(outputVolume=dict(), ) @@ -39,4 +41,3 @@ def test_extractNrrdVectorIndex_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAnisotropyMap.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAnisotropyMap.py index 779a9f4155..eccf216089 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAnisotropyMap.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAnisotropyMap.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractAnisotropyMap + def test_gtractAnisotropyMap_inputs(): input_map = dict(anisotropyType=dict(argstr='--anisotropyType %s', ), @@ -29,6 +30,7 @@ def test_gtractAnisotropyMap_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractAnisotropyMap_outputs(): output_map = dict(outputVolume=dict(), ) @@ -37,4 +39,3 @@ def test_gtractAnisotropyMap_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAverageBvalues.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAverageBvalues.py index 25dfb3e1f7..3c00c388cf 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAverageBvalues.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAverageBvalues.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractAverageBvalues + def test_gtractAverageBvalues_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_gtractAverageBvalues_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractAverageBvalues_outputs(): output_map = dict(outputVolume=dict(), ) @@ -39,4 +41,3 @@ def test_gtractAverageBvalues_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractClipAnisotropy.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractClipAnisotropy.py index 66827b5129..95970529ef 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractClipAnisotropy.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractClipAnisotropy.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractClipAnisotropy + def test_gtractClipAnisotropy_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_gtractClipAnisotropy_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractClipAnisotropy_outputs(): output_map = dict(outputVolume=dict(), ) @@ -39,4 +41,3 @@ def test_gtractClipAnisotropy_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoRegAnatomy.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoRegAnatomy.py index b08543b760..60ce5e72a4 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoRegAnatomy.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoRegAnatomy.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractCoRegAnatomy + def test_gtractCoRegAnatomy_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -70,6 +71,7 @@ def test_gtractCoRegAnatomy_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractCoRegAnatomy_outputs(): output_map = dict(outputTransformName=dict(), ) @@ -78,4 +80,3 @@ def test_gtractCoRegAnatomy_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractConcatDwi.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractConcatDwi.py index a553336672..0cfe65e61d 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractConcatDwi.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractConcatDwi.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractConcatDwi + def test_gtractConcatDwi_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_gtractConcatDwi_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractConcatDwi_outputs(): output_map = dict(outputVolume=dict(), ) @@ -37,4 +39,3 @@ def test_gtractConcatDwi_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCopyImageOrientation.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCopyImageOrientation.py index ef8dacf00f..e16d80814d 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCopyImageOrientation.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCopyImageOrientation.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractCopyImageOrientation + def test_gtractCopyImageOrientation_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_gtractCopyImageOrientation_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractCopyImageOrientation_outputs(): output_map = dict(outputVolume=dict(), ) @@ -37,4 +39,3 @@ def test_gtractCopyImageOrientation_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoregBvalues.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoregBvalues.py index c210e61cbd..c6b69bc116 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoregBvalues.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoregBvalues.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractCoregBvalues + def test_gtractCoregBvalues_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -54,6 +55,7 @@ def test_gtractCoregBvalues_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractCoregBvalues_outputs(): output_map = dict(outputTransform=dict(), outputVolume=dict(), @@ -63,4 +65,3 @@ def test_gtractCoregBvalues_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCostFastMarching.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCostFastMarching.py index 7faf8558f3..84b91e79dc 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCostFastMarching.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCostFastMarching.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractCostFastMarching + def test_gtractCostFastMarching_inputs(): input_map = dict(anisotropyWeight=dict(argstr='--anisotropyWeight %f', ), @@ -42,6 +43,7 @@ def test_gtractCostFastMarching_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractCostFastMarching_outputs(): output_map = dict(outputCostVolume=dict(), outputSpeedVolume=dict(), @@ -51,4 +53,3 @@ def test_gtractCostFastMarching_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCreateGuideFiber.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCreateGuideFiber.py index 1ff8663d6c..ed4c3a7891 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCreateGuideFiber.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCreateGuideFiber.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractCreateGuideFiber + def test_gtractCreateGuideFiber_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_gtractCreateGuideFiber_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractCreateGuideFiber_outputs(): output_map = dict(outputFiber=dict(), ) @@ -39,4 +41,3 @@ def test_gtractCreateGuideFiber_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFastMarchingTracking.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFastMarchingTracking.py index d7ab24874b..80b431b91d 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFastMarchingTracking.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFastMarchingTracking.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractFastMarchingTracking + def test_gtractFastMarchingTracking_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -49,6 +50,7 @@ def test_gtractFastMarchingTracking_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractFastMarchingTracking_outputs(): output_map = dict(outputTract=dict(), ) @@ -57,4 +59,3 @@ def test_gtractFastMarchingTracking_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFiberTracking.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFiberTracking.py index a634895777..e9aa021e41 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFiberTracking.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFiberTracking.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractFiberTracking + def test_gtractFiberTracking_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -77,6 +78,7 @@ def test_gtractFiberTracking_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractFiberTracking_outputs(): output_map = dict(outputTract=dict(), ) @@ -85,4 +87,3 @@ def test_gtractFiberTracking_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractImageConformity.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractImageConformity.py index 1f555d1afd..f14f17359a 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractImageConformity.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractImageConformity.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractImageConformity + def test_gtractImageConformity_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_gtractImageConformity_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractImageConformity_outputs(): output_map = dict(outputVolume=dict(), ) @@ -37,4 +39,3 @@ def test_gtractImageConformity_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertBSplineTransform.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertBSplineTransform.py index 84a5b8c6d0..476a05e6ec 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertBSplineTransform.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertBSplineTransform.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractInvertBSplineTransform + def test_gtractInvertBSplineTransform_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_gtractInvertBSplineTransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractInvertBSplineTransform_outputs(): output_map = dict(outputTransform=dict(), ) @@ -40,4 +42,3 @@ def test_gtractInvertBSplineTransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertDisplacementField.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertDisplacementField.py index d1cf84126c..db5b1e8b7a 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertDisplacementField.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertDisplacementField.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractInvertDisplacementField + def test_gtractInvertDisplacementField_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_gtractInvertDisplacementField_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractInvertDisplacementField_outputs(): output_map = dict(outputVolume=dict(), ) @@ -39,4 +41,3 @@ def test_gtractInvertDisplacementField_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertRigidTransform.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertRigidTransform.py index c76a097da9..4286c0769e 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertRigidTransform.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertRigidTransform.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractInvertRigidTransform + def test_gtractInvertRigidTransform_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -27,6 +28,7 @@ def test_gtractInvertRigidTransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractInvertRigidTransform_outputs(): output_map = dict(outputTransform=dict(), ) @@ -35,4 +37,3 @@ def test_gtractInvertRigidTransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleAnisotropy.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleAnisotropy.py index a373d9802b..1887a216b9 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleAnisotropy.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleAnisotropy.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractResampleAnisotropy + def test_gtractResampleAnisotropy_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_gtractResampleAnisotropy_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractResampleAnisotropy_outputs(): output_map = dict(outputVolume=dict(), ) @@ -41,4 +43,3 @@ def test_gtractResampleAnisotropy_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleB0.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleB0.py index 1eaf64701f..1623574a96 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleB0.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleB0.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractResampleB0 + def test_gtractResampleB0_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -35,6 +36,7 @@ def test_gtractResampleB0_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractResampleB0_outputs(): output_map = dict(outputVolume=dict(), ) @@ -43,4 +45,3 @@ def test_gtractResampleB0_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleCodeImage.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleCodeImage.py index e66f094f90..78fc493bb0 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleCodeImage.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleCodeImage.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractResampleCodeImage + def test_gtractResampleCodeImage_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_gtractResampleCodeImage_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractResampleCodeImage_outputs(): output_map = dict(outputVolume=dict(), ) @@ -41,4 +43,3 @@ def test_gtractResampleCodeImage_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleDWIInPlace.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleDWIInPlace.py index 3e1d5011e1..da647cf1f0 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleDWIInPlace.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleDWIInPlace.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractResampleDWIInPlace + def test_gtractResampleDWIInPlace_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -41,6 +42,7 @@ def test_gtractResampleDWIInPlace_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractResampleDWIInPlace_outputs(): output_map = dict(outputResampledB0=dict(), outputVolume=dict(), @@ -50,4 +52,3 @@ def test_gtractResampleDWIInPlace_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleFibers.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleFibers.py index 483d52d89c..f8954b20fb 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleFibers.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleFibers.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractResampleFibers + def test_gtractResampleFibers_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_gtractResampleFibers_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractResampleFibers_outputs(): output_map = dict(outputTract=dict(), ) @@ -41,4 +43,3 @@ def test_gtractResampleFibers_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTensor.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTensor.py index 890b1dc9af..9b35d8ffd5 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTensor.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTensor.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractTensor + def test_gtractTensor_inputs(): input_map = dict(applyMeasurementFrame=dict(argstr='--applyMeasurementFrame ', ), @@ -47,6 +48,7 @@ def test_gtractTensor_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractTensor_outputs(): output_map = dict(outputVolume=dict(), ) @@ -55,4 +57,3 @@ def test_gtractTensor_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTransformToDisplacementField.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTransformToDisplacementField.py index 75f4671bdc..1e74ff01ee 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTransformToDisplacementField.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTransformToDisplacementField.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..gtract import gtractTransformToDisplacementField + def test_gtractTransformToDisplacementField_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_gtractTransformToDisplacementField_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_gtractTransformToDisplacementField_outputs(): output_map = dict(outputDeformationFieldVolume=dict(), ) @@ -37,4 +39,3 @@ def test_gtractTransformToDisplacementField_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_maxcurvature.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_maxcurvature.py index 84f476b1a7..12958f9a32 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_maxcurvature.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_maxcurvature.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..maxcurvature import maxcurvature + def test_maxcurvature_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_maxcurvature_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_maxcurvature_outputs(): output_map = dict(output=dict(), ) @@ -37,4 +39,3 @@ def test_maxcurvature_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_UKFTractography.py b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_UKFTractography.py index 98c9a05add..5550a1e903 100644 --- a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_UKFTractography.py +++ b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_UKFTractography.py @@ -2,6 +2,7 @@ from ......testing import assert_equal from ..ukftractography import UKFTractography + def test_UKFTractography_inputs(): input_map = dict(Ql=dict(argstr='--Ql %f', ), @@ -89,6 +90,7 @@ def test_UKFTractography_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_UKFTractography_outputs(): output_map = dict(tracts=dict(), tractsWithSecondTensor=dict(), @@ -98,4 +100,3 @@ def test_UKFTractography_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberprocess.py b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberprocess.py index a1ba70176c..b607a189d7 100644 --- a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberprocess.py +++ b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberprocess.py @@ -2,6 +2,7 @@ from ......testing import assert_equal from ..fiberprocess import fiberprocess + def test_fiberprocess_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -50,6 +51,7 @@ def test_fiberprocess_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_fiberprocess_outputs(): output_map = dict(fiber_output=dict(), voxelize=dict(), @@ -59,4 +61,3 @@ def test_fiberprocess_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberstats.py b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberstats.py index f2c5af669d..8521e59239 100644 --- a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberstats.py +++ b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberstats.py @@ -2,6 +2,7 @@ from ......testing import assert_equal from ..commandlineonly import fiberstats + def test_fiberstats_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -24,6 +25,7 @@ def test_fiberstats_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_fiberstats_outputs(): output_map = dict() outputs = fiberstats.output_spec() @@ -31,4 +33,3 @@ def test_fiberstats_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fibertrack.py b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fibertrack.py index a903b0fa7d..d12c437f1c 100644 --- a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fibertrack.py +++ b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fibertrack.py @@ -2,6 +2,7 @@ from ......testing import assert_equal from ..fibertrack import fibertrack + def test_fibertrack_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -47,6 +48,7 @@ def test_fibertrack_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_fibertrack_outputs(): output_map = dict(output_fiber_file=dict(), ) @@ -55,4 +57,3 @@ def test_fibertrack_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_CannyEdge.py b/nipype/interfaces/semtools/filtering/tests/test_auto_CannyEdge.py index 49f6caeaa7..f09e7e139a 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_CannyEdge.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_CannyEdge.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import CannyEdge + def test_CannyEdge_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_CannyEdge_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CannyEdge_outputs(): output_map = dict(outputVolume=dict(), ) @@ -39,4 +41,3 @@ def test_CannyEdge_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_CannySegmentationLevelSetImageFilter.py b/nipype/interfaces/semtools/filtering/tests/test_auto_CannySegmentationLevelSetImageFilter.py index d8d4af7c35..5dd69484aa 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_CannySegmentationLevelSetImageFilter.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_CannySegmentationLevelSetImageFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import CannySegmentationLevelSetImageFilter + def test_CannySegmentationLevelSetImageFilter_inputs(): input_map = dict(advectionWeight=dict(argstr='--advectionWeight %f', ), @@ -40,6 +41,7 @@ def test_CannySegmentationLevelSetImageFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CannySegmentationLevelSetImageFilter_outputs(): output_map = dict(outputSpeedVolume=dict(), outputVolume=dict(), @@ -49,4 +51,3 @@ def test_CannySegmentationLevelSetImageFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_DilateImage.py b/nipype/interfaces/semtools/filtering/tests/test_auto_DilateImage.py index f419053ea4..353924d80f 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_DilateImage.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_DilateImage.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import DilateImage + def test_DilateImage_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_DilateImage_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DilateImage_outputs(): output_map = dict(outputVolume=dict(), ) @@ -37,4 +39,3 @@ def test_DilateImage_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_DilateMask.py b/nipype/interfaces/semtools/filtering/tests/test_auto_DilateMask.py index 40e1e30a33..91fb032420 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_DilateMask.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_DilateMask.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import DilateMask + def test_DilateMask_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_DilateMask_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DilateMask_outputs(): output_map = dict(outputVolume=dict(), ) @@ -39,4 +41,3 @@ def test_DilateMask_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_DistanceMaps.py b/nipype/interfaces/semtools/filtering/tests/test_auto_DistanceMaps.py index 866b57d539..6e43ad16ee 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_DistanceMaps.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_DistanceMaps.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import DistanceMaps + def test_DistanceMaps_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_DistanceMaps_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DistanceMaps_outputs(): output_map = dict(outputVolume=dict(), ) @@ -37,4 +39,3 @@ def test_DistanceMaps_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_DumpBinaryTrainingVectors.py b/nipype/interfaces/semtools/filtering/tests/test_auto_DumpBinaryTrainingVectors.py index a00278d312..b588e4bcf6 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_DumpBinaryTrainingVectors.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_DumpBinaryTrainingVectors.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import DumpBinaryTrainingVectors + def test_DumpBinaryTrainingVectors_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -24,6 +25,7 @@ def test_DumpBinaryTrainingVectors_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DumpBinaryTrainingVectors_outputs(): output_map = dict() outputs = DumpBinaryTrainingVectors.output_spec() @@ -31,4 +33,3 @@ def test_DumpBinaryTrainingVectors_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_ErodeImage.py b/nipype/interfaces/semtools/filtering/tests/test_auto_ErodeImage.py index f041f1857e..81c8429e13 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_ErodeImage.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_ErodeImage.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import ErodeImage + def test_ErodeImage_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_ErodeImage_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ErodeImage_outputs(): output_map = dict(outputVolume=dict(), ) @@ -37,4 +39,3 @@ def test_ErodeImage_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_FlippedDifference.py b/nipype/interfaces/semtools/filtering/tests/test_auto_FlippedDifference.py index bde8e2d405..3c86f288fa 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_FlippedDifference.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_FlippedDifference.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import FlippedDifference + def test_FlippedDifference_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -27,6 +28,7 @@ def test_FlippedDifference_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FlippedDifference_outputs(): output_map = dict(outputVolume=dict(), ) @@ -35,4 +37,3 @@ def test_FlippedDifference_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateBrainClippedImage.py b/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateBrainClippedImage.py index b85e616ff8..c605f8deea 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateBrainClippedImage.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateBrainClippedImage.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import GenerateBrainClippedImage + def test_GenerateBrainClippedImage_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_GenerateBrainClippedImage_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GenerateBrainClippedImage_outputs(): output_map = dict(outputFileName=dict(), ) @@ -37,4 +39,3 @@ def test_GenerateBrainClippedImage_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateSummedGradientImage.py b/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateSummedGradientImage.py index 5873f1e8a7..fe720a4850 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateSummedGradientImage.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateSummedGradientImage.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import GenerateSummedGradientImage + def test_GenerateSummedGradientImage_inputs(): input_map = dict(MaximumGradient=dict(argstr='--MaximumGradient ', ), @@ -31,6 +32,7 @@ def test_GenerateSummedGradientImage_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GenerateSummedGradientImage_outputs(): output_map = dict(outputFileName=dict(), ) @@ -39,4 +41,3 @@ def test_GenerateSummedGradientImage_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateTestImage.py b/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateTestImage.py index cd786d6097..869788f527 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateTestImage.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateTestImage.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import GenerateTestImage + def test_GenerateTestImage_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_GenerateTestImage_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GenerateTestImage_outputs(): output_map = dict(outputVolume=dict(), ) @@ -39,4 +41,3 @@ def test_GenerateTestImage_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_GradientAnisotropicDiffusionImageFilter.py b/nipype/interfaces/semtools/filtering/tests/test_auto_GradientAnisotropicDiffusionImageFilter.py index cf0f3ccca1..d31e178ccb 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_GradientAnisotropicDiffusionImageFilter.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_GradientAnisotropicDiffusionImageFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import GradientAnisotropicDiffusionImageFilter + def test_GradientAnisotropicDiffusionImageFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_GradientAnisotropicDiffusionImageFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GradientAnisotropicDiffusionImageFilter_outputs(): output_map = dict(outputVolume=dict(), ) @@ -39,4 +41,3 @@ def test_GradientAnisotropicDiffusionImageFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_HammerAttributeCreator.py b/nipype/interfaces/semtools/filtering/tests/test_auto_HammerAttributeCreator.py index 4c8813a1c4..2d7cfa38a8 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_HammerAttributeCreator.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_HammerAttributeCreator.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import HammerAttributeCreator + def test_HammerAttributeCreator_inputs(): input_map = dict(Scale=dict(argstr='--Scale %d', ), @@ -32,6 +33,7 @@ def test_HammerAttributeCreator_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_HammerAttributeCreator_outputs(): output_map = dict() outputs = HammerAttributeCreator.output_spec() @@ -39,4 +41,3 @@ def test_HammerAttributeCreator_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMean.py b/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMean.py index 5d9cfae916..82b34513f5 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMean.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMean.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import NeighborhoodMean + def test_NeighborhoodMean_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_NeighborhoodMean_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_NeighborhoodMean_outputs(): output_map = dict(outputVolume=dict(), ) @@ -37,4 +39,3 @@ def test_NeighborhoodMean_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMedian.py b/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMedian.py index 1f59a35b07..3c22450067 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMedian.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMedian.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import NeighborhoodMedian + def test_NeighborhoodMedian_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_NeighborhoodMedian_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_NeighborhoodMedian_outputs(): output_map = dict(outputVolume=dict(), ) @@ -37,4 +39,3 @@ def test_NeighborhoodMedian_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_STAPLEAnalysis.py b/nipype/interfaces/semtools/filtering/tests/test_auto_STAPLEAnalysis.py index 2cc852cefe..410cfc40b7 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_STAPLEAnalysis.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_STAPLEAnalysis.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import STAPLEAnalysis + def test_STAPLEAnalysis_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -27,6 +28,7 @@ def test_STAPLEAnalysis_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_STAPLEAnalysis_outputs(): output_map = dict(outputVolume=dict(), ) @@ -35,4 +37,3 @@ def test_STAPLEAnalysis_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_TextureFromNoiseImageFilter.py b/nipype/interfaces/semtools/filtering/tests/test_auto_TextureFromNoiseImageFilter.py index 1c29c32681..2b20435355 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_TextureFromNoiseImageFilter.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_TextureFromNoiseImageFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import TextureFromNoiseImageFilter + def test_TextureFromNoiseImageFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -27,6 +28,7 @@ def test_TextureFromNoiseImageFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TextureFromNoiseImageFilter_outputs(): output_map = dict(outputVolume=dict(), ) @@ -35,4 +37,3 @@ def test_TextureFromNoiseImageFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_TextureMeasureFilter.py b/nipype/interfaces/semtools/filtering/tests/test_auto_TextureMeasureFilter.py index 74f3adfe9f..77c1f8220d 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_TextureMeasureFilter.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_TextureMeasureFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..featuredetection import TextureMeasureFilter + def test_TextureMeasureFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_TextureMeasureFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TextureMeasureFilter_outputs(): output_map = dict(outputFilename=dict(), ) @@ -39,4 +41,3 @@ def test_TextureMeasureFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_UnbiasedNonLocalMeans.py b/nipype/interfaces/semtools/filtering/tests/test_auto_UnbiasedNonLocalMeans.py index 9d1ec355c4..9d4de6b37b 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_UnbiasedNonLocalMeans.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_UnbiasedNonLocalMeans.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..denoising import UnbiasedNonLocalMeans + def test_UnbiasedNonLocalMeans_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -39,6 +40,7 @@ def test_UnbiasedNonLocalMeans_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_UnbiasedNonLocalMeans_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -48,4 +50,3 @@ def test_UnbiasedNonLocalMeans_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/legacy/tests/test_auto_scalartransform.py b/nipype/interfaces/semtools/legacy/tests/test_auto_scalartransform.py index 1d49041ea6..5885b351e0 100644 --- a/nipype/interfaces/semtools/legacy/tests/test_auto_scalartransform.py +++ b/nipype/interfaces/semtools/legacy/tests/test_auto_scalartransform.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..registration import scalartransform + def test_scalartransform_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -36,6 +37,7 @@ def test_scalartransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_scalartransform_outputs(): output_map = dict(output_image=dict(), transformation=dict(), @@ -45,4 +47,3 @@ def test_scalartransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSDemonWarp.py b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSDemonWarp.py index 6bb0b716cc..fa3caa8d79 100644 --- a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSDemonWarp.py +++ b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSDemonWarp.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import BRAINSDemonWarp + def test_BRAINSDemonWarp_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -110,6 +111,7 @@ def test_BRAINSDemonWarp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSDemonWarp_outputs(): output_map = dict(outputCheckerboardVolume=dict(), outputDisplacementFieldVolume=dict(), @@ -120,4 +122,3 @@ def test_BRAINSDemonWarp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSFit.py b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSFit.py index 8a3c229d99..feb165f1e2 100644 --- a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSFit.py +++ b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSFit.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brainsfit import BRAINSFit + def test_BRAINSFit_inputs(): input_map = dict(ROIAutoClosingSize=dict(argstr='--ROIAutoClosingSize %f', ), @@ -163,6 +164,7 @@ def test_BRAINSFit_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSFit_outputs(): output_map = dict(bsplineTransform=dict(), linearTransform=dict(), @@ -178,4 +180,3 @@ def test_BRAINSFit_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResample.py b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResample.py index 9dd1c3c00a..e6d8c39ae8 100644 --- a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResample.py +++ b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResample.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brainsresample import BRAINSResample + def test_BRAINSResample_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -44,6 +45,7 @@ def test_BRAINSResample_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSResample_outputs(): output_map = dict(outputVolume=dict(), ) @@ -52,4 +54,3 @@ def test_BRAINSResample_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResize.py b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResize.py index e1180bd075..8ea205c2c6 100644 --- a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResize.py +++ b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResize.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brainsresize import BRAINSResize + def test_BRAINSResize_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_BRAINSResize_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSResize_outputs(): output_map = dict(outputVolume=dict(), ) @@ -37,4 +39,3 @@ def test_BRAINSResize_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSTransformFromFiducials.py b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSTransformFromFiducials.py index 69abf621d3..f7e228e28d 100644 --- a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSTransformFromFiducials.py +++ b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSTransformFromFiducials.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import BRAINSTransformFromFiducials + def test_BRAINSTransformFromFiducials_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -35,6 +36,7 @@ def test_BRAINSTransformFromFiducials_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSTransformFromFiducials_outputs(): output_map = dict(saveTransform=dict(), ) @@ -43,4 +45,3 @@ def test_BRAINSTransformFromFiducials_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/registration/tests/test_auto_VBRAINSDemonWarp.py b/nipype/interfaces/semtools/registration/tests/test_auto_VBRAINSDemonWarp.py index b0445a4380..50df05872a 100644 --- a/nipype/interfaces/semtools/registration/tests/test_auto_VBRAINSDemonWarp.py +++ b/nipype/interfaces/semtools/registration/tests/test_auto_VBRAINSDemonWarp.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import VBRAINSDemonWarp + def test_VBRAINSDemonWarp_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -113,6 +114,7 @@ def test_VBRAINSDemonWarp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_VBRAINSDemonWarp_outputs(): output_map = dict(outputCheckerboardVolume=dict(), outputDisplacementFieldVolume=dict(), @@ -123,4 +125,3 @@ def test_VBRAINSDemonWarp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSABC.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSABC.py index 30d070119d..2d0ea9442f 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSABC.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSABC.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import BRAINSABC + def test_BRAINSABC_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -91,6 +92,7 @@ def test_BRAINSABC_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSABC_outputs(): output_map = dict(atlasToSubjectInitialTransform=dict(), atlasToSubjectTransform=dict(), @@ -106,4 +108,3 @@ def test_BRAINSABC_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSConstellationDetector.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSConstellationDetector.py index 208f6ceba9..39556f42d0 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSConstellationDetector.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSConstellationDetector.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import BRAINSConstellationDetector + def test_BRAINSConstellationDetector_inputs(): input_map = dict(BackgroundFillValue=dict(argstr='--BackgroundFillValue %s', ), @@ -115,6 +116,7 @@ def test_BRAINSConstellationDetector_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSConstellationDetector_outputs(): output_map = dict(outputLandmarksInACPCAlignedSpace=dict(), outputLandmarksInInputSpace=dict(), @@ -132,4 +134,3 @@ def test_BRAINSConstellationDetector_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCreateLabelMapFromProbabilityMaps.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCreateLabelMapFromProbabilityMaps.py index d583f7458c..88ce476209 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCreateLabelMapFromProbabilityMaps.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCreateLabelMapFromProbabilityMaps.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import BRAINSCreateLabelMapFromProbabilityMaps + def test_BRAINSCreateLabelMapFromProbabilityMaps_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -38,6 +39,7 @@ def test_BRAINSCreateLabelMapFromProbabilityMaps_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSCreateLabelMapFromProbabilityMaps_outputs(): output_map = dict(cleanLabelVolume=dict(), dirtyLabelVolume=dict(), @@ -47,4 +49,3 @@ def test_BRAINSCreateLabelMapFromProbabilityMaps_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCut.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCut.py index ce6273d108..7efdf9a1cc 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCut.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCut.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import BRAINSCut + def test_BRAINSCut_inputs(): input_map = dict(NoTrainingVectorShuffling=dict(argstr='--NoTrainingVectorShuffling ', ), @@ -54,6 +55,7 @@ def test_BRAINSCut_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSCut_outputs(): output_map = dict() outputs = BRAINSCut.output_spec() @@ -61,4 +63,3 @@ def test_BRAINSCut_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSMultiSTAPLE.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSMultiSTAPLE.py index ad12b7a00d..86daa0bb17 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSMultiSTAPLE.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSMultiSTAPLE.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import BRAINSMultiSTAPLE + def test_BRAINSMultiSTAPLE_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -38,6 +39,7 @@ def test_BRAINSMultiSTAPLE_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSMultiSTAPLE_outputs(): output_map = dict(outputConfusionMatrix=dict(), outputMultiSTAPLE=dict(), @@ -47,4 +49,3 @@ def test_BRAINSMultiSTAPLE_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSROIAuto.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSROIAuto.py index 10b4df6a6a..eaffbf7909 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSROIAuto.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSROIAuto.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import BRAINSROIAuto + def test_BRAINSROIAuto_inputs(): input_map = dict(ROIAutoDilateSize=dict(argstr='--ROIAutoDilateSize %f', ), @@ -44,6 +45,7 @@ def test_BRAINSROIAuto_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSROIAuto_outputs(): output_map = dict(outputROIMaskVolume=dict(), outputVolume=dict(), @@ -53,4 +55,3 @@ def test_BRAINSROIAuto_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BinaryMaskEditorBasedOnLandmarks.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BinaryMaskEditorBasedOnLandmarks.py index d6dcaee899..85ae45ffa7 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BinaryMaskEditorBasedOnLandmarks.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BinaryMaskEditorBasedOnLandmarks.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import BinaryMaskEditorBasedOnLandmarks + def test_BinaryMaskEditorBasedOnLandmarks_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -39,6 +40,7 @@ def test_BinaryMaskEditorBasedOnLandmarks_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BinaryMaskEditorBasedOnLandmarks_outputs(): output_map = dict(outputBinaryVolume=dict(), ) @@ -47,4 +49,3 @@ def test_BinaryMaskEditorBasedOnLandmarks_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_ESLR.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_ESLR.py index 8903cb7a29..943e609b99 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_ESLR.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_ESLR.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import ESLR + def test_ESLR_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -39,6 +40,7 @@ def test_ESLR_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ESLR_outputs(): output_map = dict(outputVolume=dict(), ) @@ -47,4 +49,3 @@ def test_ESLR_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/tests/test_auto_DWICompare.py b/nipype/interfaces/semtools/tests/test_auto_DWICompare.py index 107767e57e..264ebfbd86 100644 --- a/nipype/interfaces/semtools/tests/test_auto_DWICompare.py +++ b/nipype/interfaces/semtools/tests/test_auto_DWICompare.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..converters import DWICompare + def test_DWICompare_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -24,6 +25,7 @@ def test_DWICompare_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DWICompare_outputs(): output_map = dict() outputs = DWICompare.output_spec() @@ -31,4 +33,3 @@ def test_DWICompare_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/tests/test_auto_DWISimpleCompare.py b/nipype/interfaces/semtools/tests/test_auto_DWISimpleCompare.py index 6160e9f642..017abf83af 100644 --- a/nipype/interfaces/semtools/tests/test_auto_DWISimpleCompare.py +++ b/nipype/interfaces/semtools/tests/test_auto_DWISimpleCompare.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..converters import DWISimpleCompare + def test_DWISimpleCompare_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -26,6 +27,7 @@ def test_DWISimpleCompare_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DWISimpleCompare_outputs(): output_map = dict() outputs = DWISimpleCompare.output_spec() @@ -33,4 +35,3 @@ def test_DWISimpleCompare_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/tests/test_auto_GenerateCsfClippedFromClassifiedImage.py b/nipype/interfaces/semtools/tests/test_auto_GenerateCsfClippedFromClassifiedImage.py index 48a7310d00..ccb2e8abd6 100644 --- a/nipype/interfaces/semtools/tests/test_auto_GenerateCsfClippedFromClassifiedImage.py +++ b/nipype/interfaces/semtools/tests/test_auto_GenerateCsfClippedFromClassifiedImage.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..featurecreator import GenerateCsfClippedFromClassifiedImage + def test_GenerateCsfClippedFromClassifiedImage_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -25,6 +26,7 @@ def test_GenerateCsfClippedFromClassifiedImage_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GenerateCsfClippedFromClassifiedImage_outputs(): output_map = dict(outputVolume=dict(), ) @@ -33,4 +35,3 @@ def test_GenerateCsfClippedFromClassifiedImage_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSAlignMSP.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSAlignMSP.py index 2d04886661..98837c75a7 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSAlignMSP.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSAlignMSP.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import BRAINSAlignMSP + def test_BRAINSAlignMSP_inputs(): input_map = dict(BackgroundFillValue=dict(argstr='--BackgroundFillValue %s', ), @@ -47,6 +48,7 @@ def test_BRAINSAlignMSP_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSAlignMSP_outputs(): output_map = dict(OutputresampleMSP=dict(), resultsDir=dict(), @@ -56,4 +58,3 @@ def test_BRAINSAlignMSP_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSClipInferior.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSClipInferior.py index 9952b24563..f7636c95d1 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSClipInferior.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSClipInferior.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import BRAINSClipInferior + def test_BRAINSClipInferior_inputs(): input_map = dict(BackgroundFillValue=dict(argstr='--BackgroundFillValue %s', ), @@ -31,6 +32,7 @@ def test_BRAINSClipInferior_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSClipInferior_outputs(): output_map = dict(outputVolume=dict(), ) @@ -39,4 +41,3 @@ def test_BRAINSClipInferior_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSConstellationModeler.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSConstellationModeler.py index f18173e992..ee8b7bb018 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSConstellationModeler.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSConstellationModeler.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import BRAINSConstellationModeler + def test_BRAINSConstellationModeler_inputs(): input_map = dict(BackgroundFillValue=dict(argstr='--BackgroundFillValue %s', ), @@ -49,6 +50,7 @@ def test_BRAINSConstellationModeler_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSConstellationModeler_outputs(): output_map = dict(outputModel=dict(), resultsDir=dict(), @@ -58,4 +60,3 @@ def test_BRAINSConstellationModeler_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSEyeDetector.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSEyeDetector.py index 83a26253c6..20072ed902 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSEyeDetector.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSEyeDetector.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import BRAINSEyeDetector + def test_BRAINSEyeDetector_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_BRAINSEyeDetector_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSEyeDetector_outputs(): output_map = dict(outputVolume=dict(), ) @@ -37,4 +39,3 @@ def test_BRAINSEyeDetector_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSInitializedControlPoints.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSInitializedControlPoints.py index 70672b58a6..fb5d164f9b 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSInitializedControlPoints.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSInitializedControlPoints.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import BRAINSInitializedControlPoints + def test_BRAINSInitializedControlPoints_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -35,6 +36,7 @@ def test_BRAINSInitializedControlPoints_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSInitializedControlPoints_outputs(): output_map = dict(outputVolume=dict(), ) @@ -43,4 +45,3 @@ def test_BRAINSInitializedControlPoints_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLandmarkInitializer.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLandmarkInitializer.py index e006d86724..def6a40242 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLandmarkInitializer.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLandmarkInitializer.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import BRAINSLandmarkInitializer + def test_BRAINSLandmarkInitializer_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_BRAINSLandmarkInitializer_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSLandmarkInitializer_outputs(): output_map = dict(outputTransformFilename=dict(), ) @@ -37,4 +39,3 @@ def test_BRAINSLandmarkInitializer_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLinearModelerEPCA.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLinearModelerEPCA.py index 8738c68876..f15061c8b4 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLinearModelerEPCA.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLinearModelerEPCA.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import BRAINSLinearModelerEPCA + def test_BRAINSLinearModelerEPCA_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -24,6 +25,7 @@ def test_BRAINSLinearModelerEPCA_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSLinearModelerEPCA_outputs(): output_map = dict() outputs = BRAINSLinearModelerEPCA.output_spec() @@ -31,4 +33,3 @@ def test_BRAINSLinearModelerEPCA_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLmkTransform.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLmkTransform.py index 71643b90d3..7bda89c361 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLmkTransform.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLmkTransform.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import BRAINSLmkTransform + def test_BRAINSLmkTransform_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -36,6 +37,7 @@ def test_BRAINSLmkTransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSLmkTransform_outputs(): output_map = dict(outputAffineTransform=dict(), outputResampledVolume=dict(), @@ -45,4 +47,3 @@ def test_BRAINSLmkTransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSMush.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSMush.py index 1137807abc..4a351563d1 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSMush.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSMush.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import BRAINSMush + def test_BRAINSMush_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -58,6 +59,7 @@ def test_BRAINSMush_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSMush_outputs(): output_map = dict(outputMask=dict(), outputVolume=dict(), @@ -68,4 +70,3 @@ def test_BRAINSMush_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSSnapShotWriter.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSSnapShotWriter.py index c3dc623af4..5ebceb6933 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSSnapShotWriter.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSSnapShotWriter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import BRAINSSnapShotWriter + def test_BRAINSSnapShotWriter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -39,6 +40,7 @@ def test_BRAINSSnapShotWriter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSSnapShotWriter_outputs(): output_map = dict(outputFilename=dict(), ) @@ -47,4 +49,3 @@ def test_BRAINSSnapShotWriter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTransformConvert.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTransformConvert.py index 262c752e4b..dd909677cc 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTransformConvert.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTransformConvert.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import BRAINSTransformConvert + def test_BRAINSTransformConvert_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_BRAINSTransformConvert_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSTransformConvert_outputs(): output_map = dict(displacementVolume=dict(), outputTransform=dict(), @@ -43,4 +45,3 @@ def test_BRAINSTransformConvert_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTrimForegroundInDirection.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTrimForegroundInDirection.py index e9da3f550d..a63835efc8 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTrimForegroundInDirection.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTrimForegroundInDirection.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import BRAINSTrimForegroundInDirection + def test_BRAINSTrimForegroundInDirection_inputs(): input_map = dict(BackgroundFillValue=dict(argstr='--BackgroundFillValue %s', ), @@ -37,6 +38,7 @@ def test_BRAINSTrimForegroundInDirection_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSTrimForegroundInDirection_outputs(): output_map = dict(outputVolume=dict(), ) @@ -45,4 +47,3 @@ def test_BRAINSTrimForegroundInDirection_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_CleanUpOverlapLabels.py b/nipype/interfaces/semtools/utilities/tests/test_auto_CleanUpOverlapLabels.py index d946909659..16e64f7910 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_CleanUpOverlapLabels.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_CleanUpOverlapLabels.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import CleanUpOverlapLabels + def test_CleanUpOverlapLabels_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -25,6 +26,7 @@ def test_CleanUpOverlapLabels_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CleanUpOverlapLabels_outputs(): output_map = dict(outputBinaryVolumes=dict(), ) @@ -33,4 +35,3 @@ def test_CleanUpOverlapLabels_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_FindCenterOfBrain.py b/nipype/interfaces/semtools/utilities/tests/test_auto_FindCenterOfBrain.py index 4000b9b184..51cd6c5b70 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_FindCenterOfBrain.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_FindCenterOfBrain.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import FindCenterOfBrain + def test_FindCenterOfBrain_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -58,6 +59,7 @@ def test_FindCenterOfBrain_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FindCenterOfBrain_outputs(): output_map = dict(clippedImageMask=dict(), debugAfterGridComputationsForegroundImage=dict(), @@ -71,4 +73,3 @@ def test_FindCenterOfBrain_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_GenerateLabelMapFromProbabilityMap.py b/nipype/interfaces/semtools/utilities/tests/test_auto_GenerateLabelMapFromProbabilityMap.py index 92fe22f2aa..28d2675275 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_GenerateLabelMapFromProbabilityMap.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_GenerateLabelMapFromProbabilityMap.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import GenerateLabelMapFromProbabilityMap + def test_GenerateLabelMapFromProbabilityMap_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -27,6 +28,7 @@ def test_GenerateLabelMapFromProbabilityMap_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GenerateLabelMapFromProbabilityMap_outputs(): output_map = dict(outputLabelVolume=dict(), ) @@ -35,4 +37,3 @@ def test_GenerateLabelMapFromProbabilityMap_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_ImageRegionPlotter.py b/nipype/interfaces/semtools/utilities/tests/test_auto_ImageRegionPlotter.py index 290476cc71..6c7f5215f8 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_ImageRegionPlotter.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_ImageRegionPlotter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import ImageRegionPlotter + def test_ImageRegionPlotter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -38,6 +39,7 @@ def test_ImageRegionPlotter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ImageRegionPlotter_outputs(): output_map = dict() outputs = ImageRegionPlotter.output_spec() @@ -45,4 +47,3 @@ def test_ImageRegionPlotter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_JointHistogram.py b/nipype/interfaces/semtools/utilities/tests/test_auto_JointHistogram.py index f78ebbb4ec..5f1ddedcb8 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_JointHistogram.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_JointHistogram.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import JointHistogram + def test_JointHistogram_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_JointHistogram_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JointHistogram_outputs(): output_map = dict() outputs = JointHistogram.output_spec() @@ -39,4 +41,3 @@ def test_JointHistogram_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_ShuffleVectorsModule.py b/nipype/interfaces/semtools/utilities/tests/test_auto_ShuffleVectorsModule.py index 9fce96a5e1..8d84a541b8 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_ShuffleVectorsModule.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_ShuffleVectorsModule.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import ShuffleVectorsModule + def test_ShuffleVectorsModule_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -27,6 +28,7 @@ def test_ShuffleVectorsModule_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ShuffleVectorsModule_outputs(): output_map = dict(outputVectorFileBaseName=dict(), ) @@ -35,4 +37,3 @@ def test_ShuffleVectorsModule_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_fcsv_to_hdf5.py b/nipype/interfaces/semtools/utilities/tests/test_auto_fcsv_to_hdf5.py index 274ed3460d..9bee62f991 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_fcsv_to_hdf5.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_fcsv_to_hdf5.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import fcsv_to_hdf5 + def test_fcsv_to_hdf5_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_fcsv_to_hdf5_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_fcsv_to_hdf5_outputs(): output_map = dict(landmarksInformationFile=dict(), modelFile=dict(), @@ -43,4 +45,3 @@ def test_fcsv_to_hdf5_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_insertMidACPCpoint.py b/nipype/interfaces/semtools/utilities/tests/test_auto_insertMidACPCpoint.py index 27be5441f5..8803f8263b 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_insertMidACPCpoint.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_insertMidACPCpoint.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import insertMidACPCpoint + def test_insertMidACPCpoint_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -25,6 +26,7 @@ def test_insertMidACPCpoint_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_insertMidACPCpoint_outputs(): output_map = dict(outputLandmarkFile=dict(), ) @@ -33,4 +35,3 @@ def test_insertMidACPCpoint_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationAligner.py b/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationAligner.py index c8246f482c..d5b97d17b2 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationAligner.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationAligner.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import landmarksConstellationAligner + def test_landmarksConstellationAligner_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -25,6 +26,7 @@ def test_landmarksConstellationAligner_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_landmarksConstellationAligner_outputs(): output_map = dict(outputLandmarksPaired=dict(), ) @@ -33,4 +35,3 @@ def test_landmarksConstellationAligner_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationWeights.py b/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationWeights.py index e4db760aab..154d17665d 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationWeights.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationWeights.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brains import landmarksConstellationWeights + def test_landmarksConstellationWeights_inputs(): input_map = dict(LLSModel=dict(argstr='--LLSModel %s', ), @@ -29,6 +30,7 @@ def test_landmarksConstellationWeights_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_landmarksConstellationWeights_outputs(): output_map = dict(outputWeightsList=dict(), ) @@ -37,4 +39,3 @@ def test_landmarksConstellationWeights_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIexport.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIexport.py index 31635cae6c..1704c064f6 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIexport.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIexport.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..diffusion import DTIexport + def test_DTIexport_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -27,6 +28,7 @@ def test_DTIexport_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DTIexport_outputs(): output_map = dict(outputFile=dict(position=-1, ), @@ -36,4 +38,3 @@ def test_DTIexport_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIimport.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIimport.py index 5b5fd34acc..dab8788688 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIimport.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIimport.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..diffusion import DTIimport + def test_DTIimport_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_DTIimport_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DTIimport_outputs(): output_map = dict(outputTensor=dict(position=-1, ), @@ -38,4 +40,3 @@ def test_DTIimport_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIJointRicianLMMSEFilter.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIJointRicianLMMSEFilter.py index c37d94420e..a5215c65b5 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIJointRicianLMMSEFilter.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIJointRicianLMMSEFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..diffusion import DWIJointRicianLMMSEFilter + def test_DWIJointRicianLMMSEFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -37,6 +38,7 @@ def test_DWIJointRicianLMMSEFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DWIJointRicianLMMSEFilter_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -46,4 +48,3 @@ def test_DWIJointRicianLMMSEFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIRicianLMMSEFilter.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIRicianLMMSEFilter.py index a608997e0c..da2e1d4d07 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIRicianLMMSEFilter.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIRicianLMMSEFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..diffusion import DWIRicianLMMSEFilter + def test_DWIRicianLMMSEFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -49,6 +50,7 @@ def test_DWIRicianLMMSEFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DWIRicianLMMSEFilter_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -58,4 +60,3 @@ def test_DWIRicianLMMSEFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIToDTIEstimation.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIToDTIEstimation.py index ce150df698..be0f92c092 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIToDTIEstimation.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIToDTIEstimation.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..diffusion import DWIToDTIEstimation + def test_DWIToDTIEstimation_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -37,6 +38,7 @@ def test_DWIToDTIEstimation_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DWIToDTIEstimation_outputs(): output_map = dict(outputBaseline=dict(position=-1, ), @@ -48,4 +50,3 @@ def test_DWIToDTIEstimation_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionTensorScalarMeasurements.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionTensorScalarMeasurements.py index c7598a94ee..425800bd41 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionTensorScalarMeasurements.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionTensorScalarMeasurements.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..diffusion import DiffusionTensorScalarMeasurements + def test_DiffusionTensorScalarMeasurements_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_DiffusionTensorScalarMeasurements_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DiffusionTensorScalarMeasurements_outputs(): output_map = dict(outputScalar=dict(position=-1, ), @@ -38,4 +40,3 @@ def test_DiffusionTensorScalarMeasurements_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionWeightedVolumeMasking.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionWeightedVolumeMasking.py index b6f8e07d8a..d325afaf71 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionWeightedVolumeMasking.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionWeightedVolumeMasking.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..diffusion import DiffusionWeightedVolumeMasking + def test_DiffusionWeightedVolumeMasking_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -35,6 +36,7 @@ def test_DiffusionWeightedVolumeMasking_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DiffusionWeightedVolumeMasking_outputs(): output_map = dict(outputBaseline=dict(position=-2, ), @@ -46,4 +48,3 @@ def test_DiffusionWeightedVolumeMasking_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_ResampleDTIVolume.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_ResampleDTIVolume.py index 976409cd75..9f7ded5f1c 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_ResampleDTIVolume.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_ResampleDTIVolume.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..diffusion import ResampleDTIVolume + def test_ResampleDTIVolume_inputs(): input_map = dict(Inverse_ITK_Transformation=dict(argstr='--Inverse_ITK_Transformation ', ), @@ -79,6 +80,7 @@ def test_ResampleDTIVolume_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ResampleDTIVolume_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -88,4 +90,3 @@ def test_ResampleDTIVolume_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_TractographyLabelMapSeeding.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_TractographyLabelMapSeeding.py index b9ec5ec713..f368cc2275 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_TractographyLabelMapSeeding.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_TractographyLabelMapSeeding.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..diffusion import TractographyLabelMapSeeding + def test_TractographyLabelMapSeeding_inputs(): input_map = dict(InputVolume=dict(argstr='%s', position=-2, @@ -58,6 +59,7 @@ def test_TractographyLabelMapSeeding_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TractographyLabelMapSeeding_outputs(): output_map = dict(OutputFibers=dict(position=-1, ), @@ -68,4 +70,3 @@ def test_TractographyLabelMapSeeding_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_AddScalarVolumes.py b/nipype/interfaces/slicer/filtering/tests/test_auto_AddScalarVolumes.py index b251028a8f..1b196c557a 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_AddScalarVolumes.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_AddScalarVolumes.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..arithmetic import AddScalarVolumes + def test_AddScalarVolumes_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_AddScalarVolumes_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_AddScalarVolumes_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -41,4 +43,3 @@ def test_AddScalarVolumes_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_CastScalarVolume.py b/nipype/interfaces/slicer/filtering/tests/test_auto_CastScalarVolume.py index e3785f9724..b24be436f8 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_CastScalarVolume.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_CastScalarVolume.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..arithmetic import CastScalarVolume + def test_CastScalarVolume_inputs(): input_map = dict(InputVolume=dict(argstr='%s', position=-2, @@ -29,6 +30,7 @@ def test_CastScalarVolume_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CastScalarVolume_outputs(): output_map = dict(OutputVolume=dict(position=-1, ), @@ -38,4 +40,3 @@ def test_CastScalarVolume_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_CheckerBoardFilter.py b/nipype/interfaces/slicer/filtering/tests/test_auto_CheckerBoardFilter.py index 4852564e6d..2ddf46c861 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_CheckerBoardFilter.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_CheckerBoardFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..checkerboardfilter import CheckerBoardFilter + def test_CheckerBoardFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_CheckerBoardFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CheckerBoardFilter_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -42,4 +44,3 @@ def test_CheckerBoardFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_CurvatureAnisotropicDiffusion.py b/nipype/interfaces/slicer/filtering/tests/test_auto_CurvatureAnisotropicDiffusion.py index d0e36b88cd..c31af700d5 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_CurvatureAnisotropicDiffusion.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_CurvatureAnisotropicDiffusion.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..denoising import CurvatureAnisotropicDiffusion + def test_CurvatureAnisotropicDiffusion_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_CurvatureAnisotropicDiffusion_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CurvatureAnisotropicDiffusion_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -42,4 +44,3 @@ def test_CurvatureAnisotropicDiffusion_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_ExtractSkeleton.py b/nipype/interfaces/slicer/filtering/tests/test_auto_ExtractSkeleton.py index 453bea8ff9..05b71f76ec 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_ExtractSkeleton.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_ExtractSkeleton.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..extractskeleton import ExtractSkeleton + def test_ExtractSkeleton_inputs(): input_map = dict(InputImageFileName=dict(argstr='%s', position=-2, @@ -35,6 +36,7 @@ def test_ExtractSkeleton_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ExtractSkeleton_outputs(): output_map = dict(OutputImageFileName=dict(position=-1, ), @@ -44,4 +46,3 @@ def test_ExtractSkeleton_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_GaussianBlurImageFilter.py b/nipype/interfaces/slicer/filtering/tests/test_auto_GaussianBlurImageFilter.py index efdfea9eea..d5b2d21589 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_GaussianBlurImageFilter.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_GaussianBlurImageFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..denoising import GaussianBlurImageFilter + def test_GaussianBlurImageFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_GaussianBlurImageFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GaussianBlurImageFilter_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -38,4 +40,3 @@ def test_GaussianBlurImageFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_GradientAnisotropicDiffusion.py b/nipype/interfaces/slicer/filtering/tests/test_auto_GradientAnisotropicDiffusion.py index 58b51833ee..c5874901c8 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_GradientAnisotropicDiffusion.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_GradientAnisotropicDiffusion.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..denoising import GradientAnisotropicDiffusion + def test_GradientAnisotropicDiffusion_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_GradientAnisotropicDiffusion_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GradientAnisotropicDiffusion_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -42,4 +44,3 @@ def test_GradientAnisotropicDiffusion_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleFillHoleImageFilter.py b/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleFillHoleImageFilter.py index 81bf49025e..794f2833ee 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleFillHoleImageFilter.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleFillHoleImageFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..morphology import GrayscaleFillHoleImageFilter + def test_GrayscaleFillHoleImageFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -27,6 +28,7 @@ def test_GrayscaleFillHoleImageFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GrayscaleFillHoleImageFilter_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -36,4 +38,3 @@ def test_GrayscaleFillHoleImageFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleGrindPeakImageFilter.py b/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleGrindPeakImageFilter.py index 6b940e03f3..3bcfd4145c 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleGrindPeakImageFilter.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleGrindPeakImageFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..morphology import GrayscaleGrindPeakImageFilter + def test_GrayscaleGrindPeakImageFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -27,6 +28,7 @@ def test_GrayscaleGrindPeakImageFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GrayscaleGrindPeakImageFilter_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -36,4 +38,3 @@ def test_GrayscaleGrindPeakImageFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_HistogramMatching.py b/nipype/interfaces/slicer/filtering/tests/test_auto_HistogramMatching.py index bdf83e33e0..2d4e23c33e 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_HistogramMatching.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_HistogramMatching.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..histogrammatching import HistogramMatching + def test_HistogramMatching_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -36,6 +37,7 @@ def test_HistogramMatching_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_HistogramMatching_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -45,4 +47,3 @@ def test_HistogramMatching_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_ImageLabelCombine.py b/nipype/interfaces/slicer/filtering/tests/test_auto_ImageLabelCombine.py index 1841c77696..a02b922e86 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_ImageLabelCombine.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_ImageLabelCombine.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..imagelabelcombine import ImageLabelCombine + def test_ImageLabelCombine_inputs(): input_map = dict(InputLabelMap_A=dict(argstr='%s', position=-3, @@ -32,6 +33,7 @@ def test_ImageLabelCombine_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ImageLabelCombine_outputs(): output_map = dict(OutputLabelMap=dict(position=-1, ), @@ -41,4 +43,3 @@ def test_ImageLabelCombine_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_MaskScalarVolume.py b/nipype/interfaces/slicer/filtering/tests/test_auto_MaskScalarVolume.py index abbd67bf79..a627bae20e 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_MaskScalarVolume.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_MaskScalarVolume.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..arithmetic import MaskScalarVolume + def test_MaskScalarVolume_inputs(): input_map = dict(InputVolume=dict(argstr='%s', position=-3, @@ -34,6 +35,7 @@ def test_MaskScalarVolume_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MaskScalarVolume_outputs(): output_map = dict(OutputVolume=dict(position=-1, ), @@ -43,4 +45,3 @@ def test_MaskScalarVolume_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_MedianImageFilter.py b/nipype/interfaces/slicer/filtering/tests/test_auto_MedianImageFilter.py index feb020d09b..d8f3489fcd 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_MedianImageFilter.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_MedianImageFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..denoising import MedianImageFilter + def test_MedianImageFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -30,6 +31,7 @@ def test_MedianImageFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MedianImageFilter_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -39,4 +41,3 @@ def test_MedianImageFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_MultiplyScalarVolumes.py b/nipype/interfaces/slicer/filtering/tests/test_auto_MultiplyScalarVolumes.py index 619af34f5e..d1038d8001 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_MultiplyScalarVolumes.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_MultiplyScalarVolumes.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..arithmetic import MultiplyScalarVolumes + def test_MultiplyScalarVolumes_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_MultiplyScalarVolumes_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MultiplyScalarVolumes_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -41,4 +43,3 @@ def test_MultiplyScalarVolumes_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_N4ITKBiasFieldCorrection.py b/nipype/interfaces/slicer/filtering/tests/test_auto_N4ITKBiasFieldCorrection.py index fe815b8c4e..9e1b7df801 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_N4ITKBiasFieldCorrection.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_N4ITKBiasFieldCorrection.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..n4itkbiasfieldcorrection import N4ITKBiasFieldCorrection + def test_N4ITKBiasFieldCorrection_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -49,6 +50,7 @@ def test_N4ITKBiasFieldCorrection_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_N4ITKBiasFieldCorrection_outputs(): output_map = dict(outputbiasfield=dict(), outputimage=dict(), @@ -58,4 +60,3 @@ def test_N4ITKBiasFieldCorrection_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_ResampleScalarVectorDWIVolume.py b/nipype/interfaces/slicer/filtering/tests/test_auto_ResampleScalarVectorDWIVolume.py index b8fe840c58..363dfe4747 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_ResampleScalarVectorDWIVolume.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_ResampleScalarVectorDWIVolume.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..resamplescalarvectordwivolume import ResampleScalarVectorDWIVolume + def test_ResampleScalarVectorDWIVolume_inputs(): input_map = dict(Inverse_ITK_Transformation=dict(argstr='--Inverse_ITK_Transformation ', ), @@ -75,6 +76,7 @@ def test_ResampleScalarVectorDWIVolume_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ResampleScalarVectorDWIVolume_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -84,4 +86,3 @@ def test_ResampleScalarVectorDWIVolume_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_SubtractScalarVolumes.py b/nipype/interfaces/slicer/filtering/tests/test_auto_SubtractScalarVolumes.py index 74d7d15497..c95b4de042 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_SubtractScalarVolumes.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_SubtractScalarVolumes.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..arithmetic import SubtractScalarVolumes + def test_SubtractScalarVolumes_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -32,6 +33,7 @@ def test_SubtractScalarVolumes_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SubtractScalarVolumes_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -41,4 +43,3 @@ def test_SubtractScalarVolumes_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_ThresholdScalarVolume.py b/nipype/interfaces/slicer/filtering/tests/test_auto_ThresholdScalarVolume.py index fcbd6ceb2d..a4f6d0f64a 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_ThresholdScalarVolume.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_ThresholdScalarVolume.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..thresholdscalarvolume import ThresholdScalarVolume + def test_ThresholdScalarVolume_inputs(): input_map = dict(InputVolume=dict(argstr='%s', position=-2, @@ -37,6 +38,7 @@ def test_ThresholdScalarVolume_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ThresholdScalarVolume_outputs(): output_map = dict(OutputVolume=dict(position=-1, ), @@ -46,4 +48,3 @@ def test_ThresholdScalarVolume_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_VotingBinaryHoleFillingImageFilter.py b/nipype/interfaces/slicer/filtering/tests/test_auto_VotingBinaryHoleFillingImageFilter.py index 314873e5e3..5c213925e0 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_VotingBinaryHoleFillingImageFilter.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_VotingBinaryHoleFillingImageFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..votingbinaryholefillingimagefilter import VotingBinaryHoleFillingImageFilter + def test_VotingBinaryHoleFillingImageFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -36,6 +37,7 @@ def test_VotingBinaryHoleFillingImageFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_VotingBinaryHoleFillingImageFilter_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -45,4 +47,3 @@ def test_VotingBinaryHoleFillingImageFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/legacy/diffusion/tests/test_auto_DWIUnbiasedNonLocalMeansFilter.py b/nipype/interfaces/slicer/legacy/diffusion/tests/test_auto_DWIUnbiasedNonLocalMeansFilter.py index 331399e3f2..3f9c41c416 100644 --- a/nipype/interfaces/slicer/legacy/diffusion/tests/test_auto_DWIUnbiasedNonLocalMeansFilter.py +++ b/nipype/interfaces/slicer/legacy/diffusion/tests/test_auto_DWIUnbiasedNonLocalMeansFilter.py @@ -2,6 +2,7 @@ from ......testing import assert_equal from ..denoising import DWIUnbiasedNonLocalMeansFilter + def test_DWIUnbiasedNonLocalMeansFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_DWIUnbiasedNonLocalMeansFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DWIUnbiasedNonLocalMeansFilter_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -49,4 +51,3 @@ def test_DWIUnbiasedNonLocalMeansFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_AffineRegistration.py b/nipype/interfaces/slicer/legacy/tests/test_auto_AffineRegistration.py index 89be9520be..bb46ea5f58 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_AffineRegistration.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_AffineRegistration.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..registration import AffineRegistration + def test_AffineRegistration_inputs(): input_map = dict(FixedImageFileName=dict(argstr='%s', position=-2, @@ -46,6 +47,7 @@ def test_AffineRegistration_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_AffineRegistration_outputs(): output_map = dict(outputtransform=dict(), resampledmovingfilename=dict(), @@ -55,4 +57,3 @@ def test_AffineRegistration_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineDeformableRegistration.py b/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineDeformableRegistration.py index 9210e0238c..761a605c75 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineDeformableRegistration.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineDeformableRegistration.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..registration import BSplineDeformableRegistration + def test_BSplineDeformableRegistration_inputs(): input_map = dict(FixedImageFileName=dict(argstr='%s', position=-2, @@ -51,6 +52,7 @@ def test_BSplineDeformableRegistration_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BSplineDeformableRegistration_outputs(): output_map = dict(outputtransform=dict(), outputwarp=dict(), @@ -61,4 +63,3 @@ def test_BSplineDeformableRegistration_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineToDeformationField.py b/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineToDeformationField.py index d955a87e03..84173d2341 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineToDeformationField.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineToDeformationField.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..converters import BSplineToDeformationField + def test_BSplineToDeformationField_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -27,6 +28,7 @@ def test_BSplineToDeformationField_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BSplineToDeformationField_outputs(): output_map = dict(defImage=dict(), ) @@ -35,4 +37,3 @@ def test_BSplineToDeformationField_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_ExpertAutomatedRegistration.py b/nipype/interfaces/slicer/legacy/tests/test_auto_ExpertAutomatedRegistration.py index 194c9889ae..e0e4c5d7eb 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_ExpertAutomatedRegistration.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_ExpertAutomatedRegistration.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..registration import ExpertAutomatedRegistration + def test_ExpertAutomatedRegistration_inputs(): input_map = dict(affineMaxIterations=dict(argstr='--affineMaxIterations %d', ), @@ -80,6 +81,7 @@ def test_ExpertAutomatedRegistration_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ExpertAutomatedRegistration_outputs(): output_map = dict(resampledImage=dict(), saveTransform=dict(), @@ -89,4 +91,3 @@ def test_ExpertAutomatedRegistration_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_LinearRegistration.py b/nipype/interfaces/slicer/legacy/tests/test_auto_LinearRegistration.py index 4a305cf83f..2945019abe 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_LinearRegistration.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_LinearRegistration.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..registration import LinearRegistration + def test_LinearRegistration_inputs(): input_map = dict(FixedImageFileName=dict(argstr='%s', position=-2, @@ -50,6 +51,7 @@ def test_LinearRegistration_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_LinearRegistration_outputs(): output_map = dict(outputtransform=dict(), resampledmovingfilename=dict(), @@ -59,4 +61,3 @@ def test_LinearRegistration_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_MultiResolutionAffineRegistration.py b/nipype/interfaces/slicer/legacy/tests/test_auto_MultiResolutionAffineRegistration.py index ad5d7a1c6d..b8ea765938 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_MultiResolutionAffineRegistration.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_MultiResolutionAffineRegistration.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..registration import MultiResolutionAffineRegistration + def test_MultiResolutionAffineRegistration_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -46,6 +47,7 @@ def test_MultiResolutionAffineRegistration_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MultiResolutionAffineRegistration_outputs(): output_map = dict(resampledImage=dict(), saveTransform=dict(), @@ -55,4 +57,3 @@ def test_MultiResolutionAffineRegistration_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdImageFilter.py b/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdImageFilter.py index 35be781ab1..0f4c9e3050 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdImageFilter.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdImageFilter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..filtering import OtsuThresholdImageFilter + def test_OtsuThresholdImageFilter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_OtsuThresholdImageFilter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_OtsuThresholdImageFilter_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -42,4 +44,3 @@ def test_OtsuThresholdImageFilter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdSegmentation.py b/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdSegmentation.py index 98a54e95c9..29f00b8e5f 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdSegmentation.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdSegmentation.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..segmentation import OtsuThresholdSegmentation + def test_OtsuThresholdSegmentation_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -35,6 +36,7 @@ def test_OtsuThresholdSegmentation_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_OtsuThresholdSegmentation_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -44,4 +46,3 @@ def test_OtsuThresholdSegmentation_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_ResampleScalarVolume.py b/nipype/interfaces/slicer/legacy/tests/test_auto_ResampleScalarVolume.py index ccaaed954d..617ea6a3df 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_ResampleScalarVolume.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_ResampleScalarVolume.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..filtering import ResampleScalarVolume + def test_ResampleScalarVolume_inputs(): input_map = dict(InputVolume=dict(argstr='%s', position=-2, @@ -32,6 +33,7 @@ def test_ResampleScalarVolume_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ResampleScalarVolume_outputs(): output_map = dict(OutputVolume=dict(position=-1, ), @@ -41,4 +43,3 @@ def test_ResampleScalarVolume_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_RigidRegistration.py b/nipype/interfaces/slicer/legacy/tests/test_auto_RigidRegistration.py index 17a3e41a43..a721fd9401 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_RigidRegistration.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_RigidRegistration.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..registration import RigidRegistration + def test_RigidRegistration_inputs(): input_map = dict(FixedImageFileName=dict(argstr='%s', position=-2, @@ -52,6 +53,7 @@ def test_RigidRegistration_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_RigidRegistration_outputs(): output_map = dict(outputtransform=dict(), resampledmovingfilename=dict(), @@ -61,4 +63,3 @@ def test_RigidRegistration_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/quantification/tests/test_auto_IntensityDifferenceMetric.py b/nipype/interfaces/slicer/quantification/tests/test_auto_IntensityDifferenceMetric.py index a0211daff0..bcc651a10c 100644 --- a/nipype/interfaces/slicer/quantification/tests/test_auto_IntensityDifferenceMetric.py +++ b/nipype/interfaces/slicer/quantification/tests/test_auto_IntensityDifferenceMetric.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..changequantification import IntensityDifferenceMetric + def test_IntensityDifferenceMetric_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_IntensityDifferenceMetric_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_IntensityDifferenceMetric_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -50,4 +52,3 @@ def test_IntensityDifferenceMetric_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/quantification/tests/test_auto_PETStandardUptakeValueComputation.py b/nipype/interfaces/slicer/quantification/tests/test_auto_PETStandardUptakeValueComputation.py index 75f63d3e47..9794302982 100644 --- a/nipype/interfaces/slicer/quantification/tests/test_auto_PETStandardUptakeValueComputation.py +++ b/nipype/interfaces/slicer/quantification/tests/test_auto_PETStandardUptakeValueComputation.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..petstandarduptakevaluecomputation import PETStandardUptakeValueComputation + def test_PETStandardUptakeValueComputation_inputs(): input_map = dict(OutputLabel=dict(argstr='--OutputLabel %s', ), @@ -41,6 +42,7 @@ def test_PETStandardUptakeValueComputation_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_PETStandardUptakeValueComputation_outputs(): output_map = dict(csvFile=dict(), ) @@ -49,4 +51,3 @@ def test_PETStandardUptakeValueComputation_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/registration/tests/test_auto_ACPCTransform.py b/nipype/interfaces/slicer/registration/tests/test_auto_ACPCTransform.py index 972f70b17c..a118de15c1 100644 --- a/nipype/interfaces/slicer/registration/tests/test_auto_ACPCTransform.py +++ b/nipype/interfaces/slicer/registration/tests/test_auto_ACPCTransform.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import ACPCTransform + def test_ACPCTransform_inputs(): input_map = dict(acpc=dict(argstr='--acpc %s...', ), @@ -29,6 +30,7 @@ def test_ACPCTransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ACPCTransform_outputs(): output_map = dict(outputTransform=dict(), ) @@ -37,4 +39,3 @@ def test_ACPCTransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSDemonWarp.py b/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSDemonWarp.py index 6bb0b716cc..fa3caa8d79 100644 --- a/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSDemonWarp.py +++ b/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSDemonWarp.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import BRAINSDemonWarp + def test_BRAINSDemonWarp_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -110,6 +111,7 @@ def test_BRAINSDemonWarp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSDemonWarp_outputs(): output_map = dict(outputCheckerboardVolume=dict(), outputDisplacementFieldVolume=dict(), @@ -120,4 +122,3 @@ def test_BRAINSDemonWarp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSFit.py b/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSFit.py index 6aa9e0762e..b28da552ed 100644 --- a/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSFit.py +++ b/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSFit.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brainsfit import BRAINSFit + def test_BRAINSFit_inputs(): input_map = dict(NEVER_USE_THIS_FLAG_IT_IS_OUTDATED_00=dict(argstr='--NEVER_USE_THIS_FLAG_IT_IS_OUTDATED_00 ', ), @@ -155,6 +156,7 @@ def test_BRAINSFit_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSFit_outputs(): output_map = dict(bsplineTransform=dict(), linearTransform=dict(), @@ -169,4 +171,3 @@ def test_BRAINSFit_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSResample.py b/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSResample.py index 9dd1c3c00a..e6d8c39ae8 100644 --- a/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSResample.py +++ b/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSResample.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..brainsresample import BRAINSResample + def test_BRAINSResample_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -44,6 +45,7 @@ def test_BRAINSResample_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSResample_outputs(): output_map = dict(outputVolume=dict(), ) @@ -52,4 +54,3 @@ def test_BRAINSResample_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/registration/tests/test_auto_FiducialRegistration.py b/nipype/interfaces/slicer/registration/tests/test_auto_FiducialRegistration.py index 24be6492df..de4cdaae40 100644 --- a/nipype/interfaces/slicer/registration/tests/test_auto_FiducialRegistration.py +++ b/nipype/interfaces/slicer/registration/tests/test_auto_FiducialRegistration.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import FiducialRegistration + def test_FiducialRegistration_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -33,6 +34,7 @@ def test_FiducialRegistration_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FiducialRegistration_outputs(): output_map = dict(saveTransform=dict(), ) @@ -41,4 +43,3 @@ def test_FiducialRegistration_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/registration/tests/test_auto_VBRAINSDemonWarp.py b/nipype/interfaces/slicer/registration/tests/test_auto_VBRAINSDemonWarp.py index b0445a4380..50df05872a 100644 --- a/nipype/interfaces/slicer/registration/tests/test_auto_VBRAINSDemonWarp.py +++ b/nipype/interfaces/slicer/registration/tests/test_auto_VBRAINSDemonWarp.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import VBRAINSDemonWarp + def test_VBRAINSDemonWarp_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -113,6 +114,7 @@ def test_VBRAINSDemonWarp_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_VBRAINSDemonWarp_outputs(): output_map = dict(outputCheckerboardVolume=dict(), outputDisplacementFieldVolume=dict(), @@ -123,4 +125,3 @@ def test_VBRAINSDemonWarp_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/segmentation/tests/test_auto_BRAINSROIAuto.py b/nipype/interfaces/slicer/segmentation/tests/test_auto_BRAINSROIAuto.py index 478804d4b3..17d9993671 100644 --- a/nipype/interfaces/slicer/segmentation/tests/test_auto_BRAINSROIAuto.py +++ b/nipype/interfaces/slicer/segmentation/tests/test_auto_BRAINSROIAuto.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import BRAINSROIAuto + def test_BRAINSROIAuto_inputs(): input_map = dict(ROIAutoDilateSize=dict(argstr='--ROIAutoDilateSize %f', ), @@ -40,6 +41,7 @@ def test_BRAINSROIAuto_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_BRAINSROIAuto_outputs(): output_map = dict(outputClippedVolumeROI=dict(), outputROIMaskVolume=dict(), @@ -49,4 +51,3 @@ def test_BRAINSROIAuto_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/segmentation/tests/test_auto_EMSegmentCommandLine.py b/nipype/interfaces/slicer/segmentation/tests/test_auto_EMSegmentCommandLine.py index defce68ae1..3a98a84d41 100644 --- a/nipype/interfaces/slicer/segmentation/tests/test_auto_EMSegmentCommandLine.py +++ b/nipype/interfaces/slicer/segmentation/tests/test_auto_EMSegmentCommandLine.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import EMSegmentCommandLine + def test_EMSegmentCommandLine_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -65,6 +66,7 @@ def test_EMSegmentCommandLine_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_EMSegmentCommandLine_outputs(): output_map = dict(generateEmptyMRMLSceneAndQuit=dict(), resultMRMLSceneFileName=dict(), @@ -75,4 +77,3 @@ def test_EMSegmentCommandLine_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/segmentation/tests/test_auto_RobustStatisticsSegmenter.py b/nipype/interfaces/slicer/segmentation/tests/test_auto_RobustStatisticsSegmenter.py index 4754fafbab..8c8c954c68 100644 --- a/nipype/interfaces/slicer/segmentation/tests/test_auto_RobustStatisticsSegmenter.py +++ b/nipype/interfaces/slicer/segmentation/tests/test_auto_RobustStatisticsSegmenter.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..specialized import RobustStatisticsSegmenter + def test_RobustStatisticsSegmenter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -40,6 +41,7 @@ def test_RobustStatisticsSegmenter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_RobustStatisticsSegmenter_outputs(): output_map = dict(segmentedImageFileName=dict(position=-1, ), @@ -49,4 +51,3 @@ def test_RobustStatisticsSegmenter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/segmentation/tests/test_auto_SimpleRegionGrowingSegmentation.py b/nipype/interfaces/slicer/segmentation/tests/test_auto_SimpleRegionGrowingSegmentation.py index 2d8329724c..a06926156e 100644 --- a/nipype/interfaces/slicer/segmentation/tests/test_auto_SimpleRegionGrowingSegmentation.py +++ b/nipype/interfaces/slicer/segmentation/tests/test_auto_SimpleRegionGrowingSegmentation.py @@ -2,6 +2,7 @@ from .....testing import assert_equal from ..simpleregiongrowingsegmentation import SimpleRegionGrowingSegmentation + def test_SimpleRegionGrowingSegmentation_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -41,6 +42,7 @@ def test_SimpleRegionGrowingSegmentation_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SimpleRegionGrowingSegmentation_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -50,4 +52,3 @@ def test_SimpleRegionGrowingSegmentation_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/tests/test_auto_DicomToNrrdConverter.py b/nipype/interfaces/slicer/tests/test_auto_DicomToNrrdConverter.py index a559ed194c..e758a394f2 100644 --- a/nipype/interfaces/slicer/tests/test_auto_DicomToNrrdConverter.py +++ b/nipype/interfaces/slicer/tests/test_auto_DicomToNrrdConverter.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..converters import DicomToNrrdConverter + def test_DicomToNrrdConverter_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -35,6 +36,7 @@ def test_DicomToNrrdConverter_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DicomToNrrdConverter_outputs(): output_map = dict(outputDirectory=dict(), ) @@ -43,4 +45,3 @@ def test_DicomToNrrdConverter_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/tests/test_auto_EMSegmentTransformToNewFormat.py b/nipype/interfaces/slicer/tests/test_auto_EMSegmentTransformToNewFormat.py index 96b8a229dd..3ef48595c8 100644 --- a/nipype/interfaces/slicer/tests/test_auto_EMSegmentTransformToNewFormat.py +++ b/nipype/interfaces/slicer/tests/test_auto_EMSegmentTransformToNewFormat.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utilities import EMSegmentTransformToNewFormat + def test_EMSegmentTransformToNewFormat_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -27,6 +28,7 @@ def test_EMSegmentTransformToNewFormat_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_EMSegmentTransformToNewFormat_outputs(): output_map = dict(outputMRMLFileName=dict(), ) @@ -35,4 +37,3 @@ def test_EMSegmentTransformToNewFormat_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/tests/test_auto_GrayscaleModelMaker.py b/nipype/interfaces/slicer/tests/test_auto_GrayscaleModelMaker.py index 6e724e0d1a..5d871640f5 100644 --- a/nipype/interfaces/slicer/tests/test_auto_GrayscaleModelMaker.py +++ b/nipype/interfaces/slicer/tests/test_auto_GrayscaleModelMaker.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..surface import GrayscaleModelMaker + def test_GrayscaleModelMaker_inputs(): input_map = dict(InputVolume=dict(argstr='%s', position=-2, @@ -39,6 +40,7 @@ def test_GrayscaleModelMaker_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GrayscaleModelMaker_outputs(): output_map = dict(OutputGeometry=dict(position=-1, ), @@ -48,4 +50,3 @@ def test_GrayscaleModelMaker_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/tests/test_auto_LabelMapSmoothing.py b/nipype/interfaces/slicer/tests/test_auto_LabelMapSmoothing.py index 00dfbb55c7..44bbf0179a 100644 --- a/nipype/interfaces/slicer/tests/test_auto_LabelMapSmoothing.py +++ b/nipype/interfaces/slicer/tests/test_auto_LabelMapSmoothing.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..surface import LabelMapSmoothing + def test_LabelMapSmoothing_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -35,6 +36,7 @@ def test_LabelMapSmoothing_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_LabelMapSmoothing_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -44,4 +46,3 @@ def test_LabelMapSmoothing_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/tests/test_auto_MergeModels.py b/nipype/interfaces/slicer/tests/test_auto_MergeModels.py index 3d76bb87a1..7dfcefb5be 100644 --- a/nipype/interfaces/slicer/tests/test_auto_MergeModels.py +++ b/nipype/interfaces/slicer/tests/test_auto_MergeModels.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..surface import MergeModels + def test_MergeModels_inputs(): input_map = dict(Model1=dict(argstr='%s', position=-3, @@ -30,6 +31,7 @@ def test_MergeModels_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MergeModels_outputs(): output_map = dict(ModelOutput=dict(position=-1, ), @@ -39,4 +41,3 @@ def test_MergeModels_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/tests/test_auto_ModelMaker.py b/nipype/interfaces/slicer/tests/test_auto_ModelMaker.py index a3cfc53d86..1137fe4898 100644 --- a/nipype/interfaces/slicer/tests/test_auto_ModelMaker.py +++ b/nipype/interfaces/slicer/tests/test_auto_ModelMaker.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..surface import ModelMaker + def test_ModelMaker_inputs(): input_map = dict(InputVolume=dict(argstr='%s', position=-1, @@ -59,6 +60,7 @@ def test_ModelMaker_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ModelMaker_outputs(): output_map = dict(modelSceneFile=dict(), ) @@ -67,4 +69,3 @@ def test_ModelMaker_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/tests/test_auto_ModelToLabelMap.py b/nipype/interfaces/slicer/tests/test_auto_ModelToLabelMap.py index 021ecb0738..2756e03782 100644 --- a/nipype/interfaces/slicer/tests/test_auto_ModelToLabelMap.py +++ b/nipype/interfaces/slicer/tests/test_auto_ModelToLabelMap.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..surface import ModelToLabelMap + def test_ModelToLabelMap_inputs(): input_map = dict(InputVolume=dict(argstr='%s', position=-3, @@ -32,6 +33,7 @@ def test_ModelToLabelMap_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ModelToLabelMap_outputs(): output_map = dict(OutputVolume=dict(position=-1, ), @@ -41,4 +43,3 @@ def test_ModelToLabelMap_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/tests/test_auto_OrientScalarVolume.py b/nipype/interfaces/slicer/tests/test_auto_OrientScalarVolume.py index cb44b3685d..4477681f60 100644 --- a/nipype/interfaces/slicer/tests/test_auto_OrientScalarVolume.py +++ b/nipype/interfaces/slicer/tests/test_auto_OrientScalarVolume.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..converters import OrientScalarVolume + def test_OrientScalarVolume_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -29,6 +30,7 @@ def test_OrientScalarVolume_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_OrientScalarVolume_outputs(): output_map = dict(outputVolume=dict(position=-1, ), @@ -38,4 +40,3 @@ def test_OrientScalarVolume_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/tests/test_auto_ProbeVolumeWithModel.py b/nipype/interfaces/slicer/tests/test_auto_ProbeVolumeWithModel.py index 6a50d3364b..842768fd27 100644 --- a/nipype/interfaces/slicer/tests/test_auto_ProbeVolumeWithModel.py +++ b/nipype/interfaces/slicer/tests/test_auto_ProbeVolumeWithModel.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..surface import ProbeVolumeWithModel + def test_ProbeVolumeWithModel_inputs(): input_map = dict(InputModel=dict(argstr='%s', position=-2, @@ -30,6 +31,7 @@ def test_ProbeVolumeWithModel_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ProbeVolumeWithModel_outputs(): output_map = dict(OutputModel=dict(position=-1, ), @@ -39,4 +41,3 @@ def test_ProbeVolumeWithModel_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/slicer/tests/test_auto_SlicerCommandLine.py b/nipype/interfaces/slicer/tests/test_auto_SlicerCommandLine.py index 9002270b19..e480e76324 100644 --- a/nipype/interfaces/slicer/tests/test_auto_SlicerCommandLine.py +++ b/nipype/interfaces/slicer/tests/test_auto_SlicerCommandLine.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..base import SlicerCommandLine + def test_SlicerCommandLine_inputs(): input_map = dict(args=dict(argstr='%s', ), diff --git a/nipype/interfaces/spm/tests/test_auto_Analyze2nii.py b/nipype/interfaces/spm/tests/test_auto_Analyze2nii.py index 9444246881..2f175f80f6 100644 --- a/nipype/interfaces/spm/tests/test_auto_Analyze2nii.py +++ b/nipype/interfaces/spm/tests/test_auto_Analyze2nii.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Analyze2nii + def test_Analyze2nii_inputs(): input_map = dict(analyze_file=dict(mandatory=True, ), @@ -23,6 +24,7 @@ def test_Analyze2nii_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Analyze2nii_outputs(): output_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -42,4 +44,3 @@ def test_Analyze2nii_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_ApplyDeformations.py b/nipype/interfaces/spm/tests/test_auto_ApplyDeformations.py index c67359d5fc..a84d6e8246 100644 --- a/nipype/interfaces/spm/tests/test_auto_ApplyDeformations.py +++ b/nipype/interfaces/spm/tests/test_auto_ApplyDeformations.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import ApplyDeformations + def test_ApplyDeformations_inputs(): input_map = dict(deformation_field=dict(field='comp{1}.def', mandatory=True, @@ -32,6 +33,7 @@ def test_ApplyDeformations_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ApplyDeformations_outputs(): output_map = dict(out_files=dict(), ) @@ -40,4 +42,3 @@ def test_ApplyDeformations_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_ApplyInverseDeformation.py b/nipype/interfaces/spm/tests/test_auto_ApplyInverseDeformation.py index 36117f1136..8eca900dd9 100644 --- a/nipype/interfaces/spm/tests/test_auto_ApplyInverseDeformation.py +++ b/nipype/interfaces/spm/tests/test_auto_ApplyInverseDeformation.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ApplyInverseDeformation + def test_ApplyInverseDeformation_inputs(): input_map = dict(bounding_box=dict(field='comp{1}.inv.comp{1}.sn2def.bb', ), @@ -38,6 +39,7 @@ def test_ApplyInverseDeformation_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ApplyInverseDeformation_outputs(): output_map = dict(out_files=dict(), ) @@ -46,4 +48,3 @@ def test_ApplyInverseDeformation_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_ApplyTransform.py b/nipype/interfaces/spm/tests/test_auto_ApplyTransform.py index 3b1c3ea7e5..090ae3e200 100644 --- a/nipype/interfaces/spm/tests/test_auto_ApplyTransform.py +++ b/nipype/interfaces/spm/tests/test_auto_ApplyTransform.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ApplyTransform + def test_ApplyTransform_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -28,6 +29,7 @@ def test_ApplyTransform_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ApplyTransform_outputs(): output_map = dict(out_file=dict(), ) @@ -36,4 +38,3 @@ def test_ApplyTransform_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_CalcCoregAffine.py b/nipype/interfaces/spm/tests/test_auto_CalcCoregAffine.py index 0fda6df16d..a058f57767 100644 --- a/nipype/interfaces/spm/tests/test_auto_CalcCoregAffine.py +++ b/nipype/interfaces/spm/tests/test_auto_CalcCoregAffine.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import CalcCoregAffine + def test_CalcCoregAffine_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -28,6 +29,7 @@ def test_CalcCoregAffine_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CalcCoregAffine_outputs(): output_map = dict(invmat=dict(), mat=dict(), @@ -37,4 +39,3 @@ def test_CalcCoregAffine_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_Coregister.py b/nipype/interfaces/spm/tests/test_auto_Coregister.py index 27147d8996..5b8eb8f51f 100644 --- a/nipype/interfaces/spm/tests/test_auto_Coregister.py +++ b/nipype/interfaces/spm/tests/test_auto_Coregister.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Coregister + def test_Coregister_inputs(): input_map = dict(apply_to_files=dict(copyfile=True, field='other', @@ -51,6 +52,7 @@ def test_Coregister_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Coregister_outputs(): output_map = dict(coregistered_files=dict(), coregistered_source=dict(), @@ -60,4 +62,3 @@ def test_Coregister_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_CreateWarped.py b/nipype/interfaces/spm/tests/test_auto_CreateWarped.py index dff0490643..043847d15e 100644 --- a/nipype/interfaces/spm/tests/test_auto_CreateWarped.py +++ b/nipype/interfaces/spm/tests/test_auto_CreateWarped.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import CreateWarped + def test_CreateWarped_inputs(): input_map = dict(flowfield_files=dict(copyfile=False, field='crt_warped.flowfields', @@ -35,6 +36,7 @@ def test_CreateWarped_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CreateWarped_outputs(): output_map = dict(warped_files=dict(), ) @@ -43,4 +45,3 @@ def test_CreateWarped_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_DARTEL.py b/nipype/interfaces/spm/tests/test_auto_DARTEL.py index 30b0146191..0e3bb00668 100644 --- a/nipype/interfaces/spm/tests/test_auto_DARTEL.py +++ b/nipype/interfaces/spm/tests/test_auto_DARTEL.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import DARTEL + def test_DARTEL_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -34,6 +35,7 @@ def test_DARTEL_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DARTEL_outputs(): output_map = dict(dartel_flow_fields=dict(), final_template_file=dict(), @@ -44,4 +46,3 @@ def test_DARTEL_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_DARTELNorm2MNI.py b/nipype/interfaces/spm/tests/test_auto_DARTELNorm2MNI.py index 037d50eead..8af7fc0285 100644 --- a/nipype/interfaces/spm/tests/test_auto_DARTELNorm2MNI.py +++ b/nipype/interfaces/spm/tests/test_auto_DARTELNorm2MNI.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import DARTELNorm2MNI + def test_DARTELNorm2MNI_inputs(): input_map = dict(apply_to_files=dict(copyfile=False, field='mni_norm.data.subjs.images', @@ -40,6 +41,7 @@ def test_DARTELNorm2MNI_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DARTELNorm2MNI_outputs(): output_map = dict(normalization_parameter_file=dict(), normalized_files=dict(), @@ -49,4 +51,3 @@ def test_DARTELNorm2MNI_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_DicomImport.py b/nipype/interfaces/spm/tests/test_auto_DicomImport.py index 8b5c3f9107..9bc1c2762e 100644 --- a/nipype/interfaces/spm/tests/test_auto_DicomImport.py +++ b/nipype/interfaces/spm/tests/test_auto_DicomImport.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import DicomImport + def test_DicomImport_inputs(): input_map = dict(format=dict(field='convopts.format', usedefault=True, @@ -36,6 +37,7 @@ def test_DicomImport_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DicomImport_outputs(): output_map = dict(out_files=dict(), ) @@ -44,4 +46,3 @@ def test_DicomImport_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_EstimateContrast.py b/nipype/interfaces/spm/tests/test_auto_EstimateContrast.py index 09dc2740b3..558790c20e 100644 --- a/nipype/interfaces/spm/tests/test_auto_EstimateContrast.py +++ b/nipype/interfaces/spm/tests/test_auto_EstimateContrast.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import EstimateContrast + def test_EstimateContrast_inputs(): input_map = dict(beta_images=dict(copyfile=False, mandatory=True, @@ -37,6 +38,7 @@ def test_EstimateContrast_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_EstimateContrast_outputs(): output_map = dict(con_images=dict(), ess_images=dict(), @@ -49,4 +51,3 @@ def test_EstimateContrast_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_EstimateModel.py b/nipype/interfaces/spm/tests/test_auto_EstimateModel.py index aa1d2ce320..44d269e89c 100644 --- a/nipype/interfaces/spm/tests/test_auto_EstimateModel.py +++ b/nipype/interfaces/spm/tests/test_auto_EstimateModel.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import EstimateModel + def test_EstimateModel_inputs(): input_map = dict(estimation_method=dict(field='method', mandatory=True, @@ -29,6 +30,7 @@ def test_EstimateModel_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_EstimateModel_outputs(): output_map = dict(RPVimage=dict(), beta_images=dict(), @@ -41,4 +43,3 @@ def test_EstimateModel_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_FactorialDesign.py b/nipype/interfaces/spm/tests/test_auto_FactorialDesign.py index 9c56e98132..c382ed3c8d 100644 --- a/nipype/interfaces/spm/tests/test_auto_FactorialDesign.py +++ b/nipype/interfaces/spm/tests/test_auto_FactorialDesign.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import FactorialDesign + def test_FactorialDesign_inputs(): input_map = dict(covariates=dict(field='cov', ), @@ -51,6 +52,7 @@ def test_FactorialDesign_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FactorialDesign_outputs(): output_map = dict(spm_mat_file=dict(), ) @@ -59,4 +61,3 @@ def test_FactorialDesign_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_Level1Design.py b/nipype/interfaces/spm/tests/test_auto_Level1Design.py index 7172a87736..de50c577c0 100644 --- a/nipype/interfaces/spm/tests/test_auto_Level1Design.py +++ b/nipype/interfaces/spm/tests/test_auto_Level1Design.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import Level1Design + def test_Level1Design_inputs(): input_map = dict(bases=dict(field='bases', mandatory=True, @@ -51,6 +52,7 @@ def test_Level1Design_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Level1Design_outputs(): output_map = dict(spm_mat_file=dict(), ) @@ -59,4 +61,3 @@ def test_Level1Design_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_MultipleRegressionDesign.py b/nipype/interfaces/spm/tests/test_auto_MultipleRegressionDesign.py index 0bdb5ccb97..5fa47fadf2 100644 --- a/nipype/interfaces/spm/tests/test_auto_MultipleRegressionDesign.py +++ b/nipype/interfaces/spm/tests/test_auto_MultipleRegressionDesign.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import MultipleRegressionDesign + def test_MultipleRegressionDesign_inputs(): input_map = dict(covariates=dict(field='cov', ), @@ -59,6 +60,7 @@ def test_MultipleRegressionDesign_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MultipleRegressionDesign_outputs(): output_map = dict(spm_mat_file=dict(), ) @@ -67,4 +69,3 @@ def test_MultipleRegressionDesign_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_NewSegment.py b/nipype/interfaces/spm/tests/test_auto_NewSegment.py index 9ca6703a97..89f6a5c18c 100644 --- a/nipype/interfaces/spm/tests/test_auto_NewSegment.py +++ b/nipype/interfaces/spm/tests/test_auto_NewSegment.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import NewSegment + def test_NewSegment_inputs(): input_map = dict(affine_regularization=dict(field='warp.affreg', ), @@ -37,6 +38,7 @@ def test_NewSegment_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_NewSegment_outputs(): output_map = dict(bias_corrected_images=dict(), bias_field_images=dict(), @@ -53,4 +55,3 @@ def test_NewSegment_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_Normalize.py b/nipype/interfaces/spm/tests/test_auto_Normalize.py index 91e9af91ea..96ce55975e 100644 --- a/nipype/interfaces/spm/tests/test_auto_Normalize.py +++ b/nipype/interfaces/spm/tests/test_auto_Normalize.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Normalize + def test_Normalize_inputs(): input_map = dict(DCT_period_cutoff=dict(field='eoptions.cutoff', ), @@ -72,6 +73,7 @@ def test_Normalize_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Normalize_outputs(): output_map = dict(normalization_parameters=dict(), normalized_files=dict(), @@ -82,4 +84,3 @@ def test_Normalize_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_Normalize12.py b/nipype/interfaces/spm/tests/test_auto_Normalize12.py index e9f3e2c80d..7fedba9d86 100644 --- a/nipype/interfaces/spm/tests/test_auto_Normalize12.py +++ b/nipype/interfaces/spm/tests/test_auto_Normalize12.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Normalize12 + def test_Normalize12_inputs(): input_map = dict(affine_regularization_type=dict(field='eoptions.affreg', ), @@ -58,6 +59,7 @@ def test_Normalize12_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Normalize12_outputs(): output_map = dict(deformation_field=dict(), normalized_files=dict(), @@ -68,4 +70,3 @@ def test_Normalize12_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_OneSampleTTestDesign.py b/nipype/interfaces/spm/tests/test_auto_OneSampleTTestDesign.py index 5153531b84..51f4e9d4e2 100644 --- a/nipype/interfaces/spm/tests/test_auto_OneSampleTTestDesign.py +++ b/nipype/interfaces/spm/tests/test_auto_OneSampleTTestDesign.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import OneSampleTTestDesign + def test_OneSampleTTestDesign_inputs(): input_map = dict(covariates=dict(field='cov', ), @@ -54,6 +55,7 @@ def test_OneSampleTTestDesign_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_OneSampleTTestDesign_outputs(): output_map = dict(spm_mat_file=dict(), ) @@ -62,4 +64,3 @@ def test_OneSampleTTestDesign_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_PairedTTestDesign.py b/nipype/interfaces/spm/tests/test_auto_PairedTTestDesign.py index 840b0ea963..b053cb58d1 100644 --- a/nipype/interfaces/spm/tests/test_auto_PairedTTestDesign.py +++ b/nipype/interfaces/spm/tests/test_auto_PairedTTestDesign.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import PairedTTestDesign + def test_PairedTTestDesign_inputs(): input_map = dict(ancova=dict(field='des.pt.ancova', ), @@ -58,6 +59,7 @@ def test_PairedTTestDesign_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_PairedTTestDesign_outputs(): output_map = dict(spm_mat_file=dict(), ) @@ -66,4 +68,3 @@ def test_PairedTTestDesign_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_Realign.py b/nipype/interfaces/spm/tests/test_auto_Realign.py index 277ada55c1..6ee1c7a110 100644 --- a/nipype/interfaces/spm/tests/test_auto_Realign.py +++ b/nipype/interfaces/spm/tests/test_auto_Realign.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Realign + def test_Realign_inputs(): input_map = dict(fwhm=dict(field='eoptions.fwhm', ), @@ -55,6 +56,7 @@ def test_Realign_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Realign_outputs(): output_map = dict(mean_image=dict(), modified_in_files=dict(), @@ -66,4 +68,3 @@ def test_Realign_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_Reslice.py b/nipype/interfaces/spm/tests/test_auto_Reslice.py index 75fc35c8d4..1687309bd7 100644 --- a/nipype/interfaces/spm/tests/test_auto_Reslice.py +++ b/nipype/interfaces/spm/tests/test_auto_Reslice.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import Reslice + def test_Reslice_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -28,6 +29,7 @@ def test_Reslice_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Reslice_outputs(): output_map = dict(out_file=dict(), ) @@ -36,4 +38,3 @@ def test_Reslice_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_ResliceToReference.py b/nipype/interfaces/spm/tests/test_auto_ResliceToReference.py index 6eba2f6aee..d791b5965a 100644 --- a/nipype/interfaces/spm/tests/test_auto_ResliceToReference.py +++ b/nipype/interfaces/spm/tests/test_auto_ResliceToReference.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..utils import ResliceToReference + def test_ResliceToReference_inputs(): input_map = dict(bounding_box=dict(field='comp{2}.idbbvox.bb', ), @@ -32,6 +33,7 @@ def test_ResliceToReference_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ResliceToReference_outputs(): output_map = dict(out_files=dict(), ) @@ -40,4 +42,3 @@ def test_ResliceToReference_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_SPMCommand.py b/nipype/interfaces/spm/tests/test_auto_SPMCommand.py index 3408497e0b..76676dd1ab 100644 --- a/nipype/interfaces/spm/tests/test_auto_SPMCommand.py +++ b/nipype/interfaces/spm/tests/test_auto_SPMCommand.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..base import SPMCommand + def test_SPMCommand_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, diff --git a/nipype/interfaces/spm/tests/test_auto_Segment.py b/nipype/interfaces/spm/tests/test_auto_Segment.py index bd8e7a0f4e..c32284105c 100644 --- a/nipype/interfaces/spm/tests/test_auto_Segment.py +++ b/nipype/interfaces/spm/tests/test_auto_Segment.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Segment + def test_Segment_inputs(): input_map = dict(affine_regularization=dict(field='opts.regtype', ), @@ -53,6 +54,7 @@ def test_Segment_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Segment_outputs(): output_map = dict(bias_corrected_image=dict(), inverse_transformation_mat=dict(), @@ -75,4 +77,3 @@ def test_Segment_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_SliceTiming.py b/nipype/interfaces/spm/tests/test_auto_SliceTiming.py index 18ee3dc537..c230c2909c 100644 --- a/nipype/interfaces/spm/tests/test_auto_SliceTiming.py +++ b/nipype/interfaces/spm/tests/test_auto_SliceTiming.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import SliceTiming + def test_SliceTiming_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -43,6 +44,7 @@ def test_SliceTiming_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SliceTiming_outputs(): output_map = dict(timecorrected_files=dict(), ) @@ -51,4 +53,3 @@ def test_SliceTiming_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_Smooth.py b/nipype/interfaces/spm/tests/test_auto_Smooth.py index b4fce66cd9..aa5708ba5f 100644 --- a/nipype/interfaces/spm/tests/test_auto_Smooth.py +++ b/nipype/interfaces/spm/tests/test_auto_Smooth.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import Smooth + def test_Smooth_inputs(): input_map = dict(data_type=dict(field='dtype', ), @@ -34,6 +35,7 @@ def test_Smooth_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Smooth_outputs(): output_map = dict(smoothed_files=dict(), ) @@ -42,4 +44,3 @@ def test_Smooth_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_Threshold.py b/nipype/interfaces/spm/tests/test_auto_Threshold.py index e9afc7fa94..e79460f980 100644 --- a/nipype/interfaces/spm/tests/test_auto_Threshold.py +++ b/nipype/interfaces/spm/tests/test_auto_Threshold.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import Threshold + def test_Threshold_inputs(): input_map = dict(contrast_index=dict(mandatory=True, ), @@ -43,6 +44,7 @@ def test_Threshold_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Threshold_outputs(): output_map = dict(activation_forced=dict(), cluster_forming_thr=dict(), @@ -56,4 +58,3 @@ def test_Threshold_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_ThresholdStatistics.py b/nipype/interfaces/spm/tests/test_auto_ThresholdStatistics.py index 04560e6178..a5363ebccd 100644 --- a/nipype/interfaces/spm/tests/test_auto_ThresholdStatistics.py +++ b/nipype/interfaces/spm/tests/test_auto_ThresholdStatistics.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import ThresholdStatistics + def test_ThresholdStatistics_inputs(): input_map = dict(contrast_index=dict(mandatory=True, ), @@ -33,6 +34,7 @@ def test_ThresholdStatistics_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_ThresholdStatistics_outputs(): output_map = dict(clusterwise_P_FDR=dict(), clusterwise_P_RF=dict(), @@ -46,4 +48,3 @@ def test_ThresholdStatistics_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_TwoSampleTTestDesign.py b/nipype/interfaces/spm/tests/test_auto_TwoSampleTTestDesign.py index 0bd2c399b3..c27ae684dc 100644 --- a/nipype/interfaces/spm/tests/test_auto_TwoSampleTTestDesign.py +++ b/nipype/interfaces/spm/tests/test_auto_TwoSampleTTestDesign.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..model import TwoSampleTTestDesign + def test_TwoSampleTTestDesign_inputs(): input_map = dict(covariates=dict(field='cov', ), @@ -61,6 +62,7 @@ def test_TwoSampleTTestDesign_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_TwoSampleTTestDesign_outputs(): output_map = dict(spm_mat_file=dict(), ) @@ -69,4 +71,3 @@ def test_TwoSampleTTestDesign_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/spm/tests/test_auto_VBMSegment.py b/nipype/interfaces/spm/tests/test_auto_VBMSegment.py index b4f9de6761..1b330af007 100644 --- a/nipype/interfaces/spm/tests/test_auto_VBMSegment.py +++ b/nipype/interfaces/spm/tests/test_auto_VBMSegment.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..preprocess import VBMSegment + def test_VBMSegment_inputs(): input_map = dict(bias_corrected_affine=dict(field='estwrite.output.bias.affine', usedefault=True, @@ -117,6 +118,7 @@ def test_VBMSegment_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_VBMSegment_outputs(): output_map = dict(bias_corrected_images=dict(), dartel_input_images=dict(), @@ -137,4 +139,3 @@ def test_VBMSegment_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_AssertEqual.py b/nipype/interfaces/tests/test_auto_AssertEqual.py index ebe528ff2f..4a1d763e43 100644 --- a/nipype/interfaces/tests/test_auto_AssertEqual.py +++ b/nipype/interfaces/tests/test_auto_AssertEqual.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..utility import AssertEqual + def test_AssertEqual_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, diff --git a/nipype/interfaces/tests/test_auto_BaseInterface.py b/nipype/interfaces/tests/test_auto_BaseInterface.py index e47c27a9aa..5851add1da 100644 --- a/nipype/interfaces/tests/test_auto_BaseInterface.py +++ b/nipype/interfaces/tests/test_auto_BaseInterface.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..base import BaseInterface + def test_BaseInterface_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, diff --git a/nipype/interfaces/tests/test_auto_C3dAffineTool.py b/nipype/interfaces/tests/test_auto_C3dAffineTool.py index efd5cb6d73..dc8cc37b8c 100644 --- a/nipype/interfaces/tests/test_auto_C3dAffineTool.py +++ b/nipype/interfaces/tests/test_auto_C3dAffineTool.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..c3 import C3dAffineTool + def test_C3dAffineTool_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -36,6 +37,7 @@ def test_C3dAffineTool_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_C3dAffineTool_outputs(): output_map = dict(itk_transform=dict(), ) @@ -44,4 +46,3 @@ def test_C3dAffineTool_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_CSVReader.py b/nipype/interfaces/tests/test_auto_CSVReader.py index 2d950112f8..a6f42de676 100644 --- a/nipype/interfaces/tests/test_auto_CSVReader.py +++ b/nipype/interfaces/tests/test_auto_CSVReader.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..utility import CSVReader + def test_CSVReader_inputs(): input_map = dict(header=dict(usedefault=True, ), @@ -14,6 +15,7 @@ def test_CSVReader_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CSVReader_outputs(): output_map = dict() outputs = CSVReader.output_spec() @@ -21,4 +23,3 @@ def test_CSVReader_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_CommandLine.py b/nipype/interfaces/tests/test_auto_CommandLine.py index 48e2716557..9ea4f08937 100644 --- a/nipype/interfaces/tests/test_auto_CommandLine.py +++ b/nipype/interfaces/tests/test_auto_CommandLine.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..base import CommandLine + def test_CommandLine_inputs(): input_map = dict(args=dict(argstr='%s', ), diff --git a/nipype/interfaces/tests/test_auto_CopyMeta.py b/nipype/interfaces/tests/test_auto_CopyMeta.py index e71481a5af..8b456d4e09 100644 --- a/nipype/interfaces/tests/test_auto_CopyMeta.py +++ b/nipype/interfaces/tests/test_auto_CopyMeta.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..dcmstack import CopyMeta + def test_CopyMeta_inputs(): input_map = dict(dest_file=dict(mandatory=True, ), @@ -16,6 +17,7 @@ def test_CopyMeta_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_CopyMeta_outputs(): output_map = dict(dest_file=dict(), ) @@ -24,4 +26,3 @@ def test_CopyMeta_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_DataFinder.py b/nipype/interfaces/tests/test_auto_DataFinder.py index 946a7497d4..8eb5faa9ea 100644 --- a/nipype/interfaces/tests/test_auto_DataFinder.py +++ b/nipype/interfaces/tests/test_auto_DataFinder.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import DataFinder + def test_DataFinder_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -22,6 +23,7 @@ def test_DataFinder_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DataFinder_outputs(): output_map = dict() outputs = DataFinder.output_spec() @@ -29,4 +31,3 @@ def test_DataFinder_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_DataGrabber.py b/nipype/interfaces/tests/test_auto_DataGrabber.py index 4af03c2ddf..f72eb2bdfe 100644 --- a/nipype/interfaces/tests/test_auto_DataGrabber.py +++ b/nipype/interfaces/tests/test_auto_DataGrabber.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import DataGrabber + def test_DataGrabber_inputs(): input_map = dict(base_directory=dict(), ignore_exception=dict(nohash=True, @@ -21,6 +22,7 @@ def test_DataGrabber_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DataGrabber_outputs(): output_map = dict() outputs = DataGrabber.output_spec() @@ -28,4 +30,3 @@ def test_DataGrabber_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_DataSink.py b/nipype/interfaces/tests/test_auto_DataSink.py index 0e43c7727e..c49647f889 100644 --- a/nipype/interfaces/tests/test_auto_DataSink.py +++ b/nipype/interfaces/tests/test_auto_DataSink.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import DataSink + def test_DataSink_inputs(): input_map = dict(_outputs=dict(usedefault=True, ), @@ -24,6 +25,7 @@ def test_DataSink_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DataSink_outputs(): output_map = dict(out_file=dict(), ) @@ -32,4 +34,3 @@ def test_DataSink_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_Dcm2nii.py b/nipype/interfaces/tests/test_auto_Dcm2nii.py index ae556e8bdc..c322f76149 100644 --- a/nipype/interfaces/tests/test_auto_Dcm2nii.py +++ b/nipype/interfaces/tests/test_auto_Dcm2nii.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..dcm2nii import Dcm2nii + def test_Dcm2nii_inputs(): input_map = dict(anonymize=dict(argstr='-a', usedefault=True, @@ -75,6 +76,7 @@ def test_Dcm2nii_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Dcm2nii_outputs(): output_map = dict(bvals=dict(), bvecs=dict(), @@ -87,4 +89,3 @@ def test_Dcm2nii_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_DcmStack.py b/nipype/interfaces/tests/test_auto_DcmStack.py index ef364f6696..c91379caa6 100644 --- a/nipype/interfaces/tests/test_auto_DcmStack.py +++ b/nipype/interfaces/tests/test_auto_DcmStack.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..dcmstack import DcmStack + def test_DcmStack_inputs(): input_map = dict(dicom_files=dict(mandatory=True, ), @@ -21,6 +22,7 @@ def test_DcmStack_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_DcmStack_outputs(): output_map = dict(out_file=dict(), ) @@ -29,4 +31,3 @@ def test_DcmStack_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_FreeSurferSource.py b/nipype/interfaces/tests/test_auto_FreeSurferSource.py index c9e71c3886..8b393bf0c4 100644 --- a/nipype/interfaces/tests/test_auto_FreeSurferSource.py +++ b/nipype/interfaces/tests/test_auto_FreeSurferSource.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import FreeSurferSource + def test_FreeSurferSource_inputs(): input_map = dict(hemi=dict(usedefault=True, ), @@ -19,6 +20,7 @@ def test_FreeSurferSource_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_FreeSurferSource_outputs(): output_map = dict(BA_stats=dict(altkey='BA', loc='stats', @@ -102,4 +104,3 @@ def test_FreeSurferSource_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_Function.py b/nipype/interfaces/tests/test_auto_Function.py index 7454cdec84..65afafbe47 100644 --- a/nipype/interfaces/tests/test_auto_Function.py +++ b/nipype/interfaces/tests/test_auto_Function.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..utility import Function + def test_Function_inputs(): input_map = dict(function_str=dict(mandatory=True, ), @@ -15,6 +16,7 @@ def test_Function_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Function_outputs(): output_map = dict() outputs = Function.output_spec() @@ -22,4 +24,3 @@ def test_Function_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_GroupAndStack.py b/nipype/interfaces/tests/test_auto_GroupAndStack.py index cab06d673b..8523f76c32 100644 --- a/nipype/interfaces/tests/test_auto_GroupAndStack.py +++ b/nipype/interfaces/tests/test_auto_GroupAndStack.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..dcmstack import GroupAndStack + def test_GroupAndStack_inputs(): input_map = dict(dicom_files=dict(mandatory=True, ), @@ -21,6 +22,7 @@ def test_GroupAndStack_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_GroupAndStack_outputs(): output_map = dict(out_list=dict(), ) @@ -29,4 +31,3 @@ def test_GroupAndStack_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_IOBase.py b/nipype/interfaces/tests/test_auto_IOBase.py index 1bcd8a8c0e..548b613986 100644 --- a/nipype/interfaces/tests/test_auto_IOBase.py +++ b/nipype/interfaces/tests/test_auto_IOBase.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import IOBase + def test_IOBase_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, diff --git a/nipype/interfaces/tests/test_auto_IdentityInterface.py b/nipype/interfaces/tests/test_auto_IdentityInterface.py index 8a4ce3f464..f5787df81c 100644 --- a/nipype/interfaces/tests/test_auto_IdentityInterface.py +++ b/nipype/interfaces/tests/test_auto_IdentityInterface.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..utility import IdentityInterface + def test_IdentityInterface_inputs(): input_map = dict() inputs = IdentityInterface.input_spec() @@ -10,6 +11,7 @@ def test_IdentityInterface_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_IdentityInterface_outputs(): output_map = dict() outputs = IdentityInterface.output_spec() @@ -17,4 +19,3 @@ def test_IdentityInterface_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_JSONFileGrabber.py b/nipype/interfaces/tests/test_auto_JSONFileGrabber.py index d7a7684f4d..a99c4c6ba2 100644 --- a/nipype/interfaces/tests/test_auto_JSONFileGrabber.py +++ b/nipype/interfaces/tests/test_auto_JSONFileGrabber.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import JSONFileGrabber + def test_JSONFileGrabber_inputs(): input_map = dict(defaults=dict(), ignore_exception=dict(nohash=True, @@ -15,6 +16,7 @@ def test_JSONFileGrabber_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JSONFileGrabber_outputs(): output_map = dict() outputs = JSONFileGrabber.output_spec() @@ -22,4 +24,3 @@ def test_JSONFileGrabber_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_JSONFileSink.py b/nipype/interfaces/tests/test_auto_JSONFileSink.py index 9632906e97..738166527f 100644 --- a/nipype/interfaces/tests/test_auto_JSONFileSink.py +++ b/nipype/interfaces/tests/test_auto_JSONFileSink.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import JSONFileSink + def test_JSONFileSink_inputs(): input_map = dict(_outputs=dict(usedefault=True, ), @@ -18,6 +19,7 @@ def test_JSONFileSink_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_JSONFileSink_outputs(): output_map = dict(out_file=dict(), ) @@ -26,4 +28,3 @@ def test_JSONFileSink_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_LookupMeta.py b/nipype/interfaces/tests/test_auto_LookupMeta.py index 276362520c..7e89973931 100644 --- a/nipype/interfaces/tests/test_auto_LookupMeta.py +++ b/nipype/interfaces/tests/test_auto_LookupMeta.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..dcmstack import LookupMeta + def test_LookupMeta_inputs(): input_map = dict(in_file=dict(mandatory=True, ), @@ -14,6 +15,7 @@ def test_LookupMeta_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_LookupMeta_outputs(): output_map = dict() outputs = LookupMeta.output_spec() @@ -21,4 +23,3 @@ def test_LookupMeta_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_MatlabCommand.py b/nipype/interfaces/tests/test_auto_MatlabCommand.py index e82fc2d665..bfc24cb064 100644 --- a/nipype/interfaces/tests/test_auto_MatlabCommand.py +++ b/nipype/interfaces/tests/test_auto_MatlabCommand.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..matlab import MatlabCommand + def test_MatlabCommand_inputs(): input_map = dict(args=dict(argstr='%s', ), diff --git a/nipype/interfaces/tests/test_auto_Merge.py b/nipype/interfaces/tests/test_auto_Merge.py index 3a68555612..adddcdebd2 100644 --- a/nipype/interfaces/tests/test_auto_Merge.py +++ b/nipype/interfaces/tests/test_auto_Merge.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..utility import Merge + def test_Merge_inputs(): input_map = dict(axis=dict(usedefault=True, ), @@ -17,6 +18,7 @@ def test_Merge_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Merge_outputs(): output_map = dict(out=dict(), ) @@ -25,4 +27,3 @@ def test_Merge_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_MergeNifti.py b/nipype/interfaces/tests/test_auto_MergeNifti.py index efa8dfdae9..3a6e0fc5a1 100644 --- a/nipype/interfaces/tests/test_auto_MergeNifti.py +++ b/nipype/interfaces/tests/test_auto_MergeNifti.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..dcmstack import MergeNifti + def test_MergeNifti_inputs(): input_map = dict(in_files=dict(mandatory=True, ), @@ -18,6 +19,7 @@ def test_MergeNifti_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MergeNifti_outputs(): output_map = dict(out_file=dict(), ) @@ -26,4 +28,3 @@ def test_MergeNifti_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_MeshFix.py b/nipype/interfaces/tests/test_auto_MeshFix.py index f1452ef49c..4c0fd67596 100644 --- a/nipype/interfaces/tests/test_auto_MeshFix.py +++ b/nipype/interfaces/tests/test_auto_MeshFix.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..meshfix import MeshFix + def test_MeshFix_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -94,6 +95,7 @@ def test_MeshFix_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_MeshFix_outputs(): output_map = dict(mesh_file=dict(), ) @@ -102,4 +104,3 @@ def test_MeshFix_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_MpiCommandLine.py b/nipype/interfaces/tests/test_auto_MpiCommandLine.py index cd715de2e2..57d1611f4d 100644 --- a/nipype/interfaces/tests/test_auto_MpiCommandLine.py +++ b/nipype/interfaces/tests/test_auto_MpiCommandLine.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..base import MpiCommandLine + def test_MpiCommandLine_inputs(): input_map = dict(args=dict(argstr='%s', ), diff --git a/nipype/interfaces/tests/test_auto_MySQLSink.py b/nipype/interfaces/tests/test_auto_MySQLSink.py index c731c08151..7b4ff10c0c 100644 --- a/nipype/interfaces/tests/test_auto_MySQLSink.py +++ b/nipype/interfaces/tests/test_auto_MySQLSink.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import MySQLSink + def test_MySQLSink_inputs(): input_map = dict(config=dict(mandatory=True, xor=['host'], diff --git a/nipype/interfaces/tests/test_auto_NiftiGeneratorBase.py b/nipype/interfaces/tests/test_auto_NiftiGeneratorBase.py index 2fa8d50ffe..762c862ed8 100644 --- a/nipype/interfaces/tests/test_auto_NiftiGeneratorBase.py +++ b/nipype/interfaces/tests/test_auto_NiftiGeneratorBase.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..dcmstack import NiftiGeneratorBase + def test_NiftiGeneratorBase_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, diff --git a/nipype/interfaces/tests/test_auto_Rename.py b/nipype/interfaces/tests/test_auto_Rename.py index 4df470a6ed..1cace232fe 100644 --- a/nipype/interfaces/tests/test_auto_Rename.py +++ b/nipype/interfaces/tests/test_auto_Rename.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..utility import Rename + def test_Rename_inputs(): input_map = dict(format_string=dict(mandatory=True, ), @@ -18,6 +19,7 @@ def test_Rename_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Rename_outputs(): output_map = dict(out_file=dict(), ) @@ -26,4 +28,3 @@ def test_Rename_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_S3DataGrabber.py b/nipype/interfaces/tests/test_auto_S3DataGrabber.py index d675d60cae..584134ca8f 100644 --- a/nipype/interfaces/tests/test_auto_S3DataGrabber.py +++ b/nipype/interfaces/tests/test_auto_S3DataGrabber.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import S3DataGrabber + def test_S3DataGrabber_inputs(): input_map = dict(anon=dict(usedefault=True, ), @@ -29,6 +30,7 @@ def test_S3DataGrabber_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_S3DataGrabber_outputs(): output_map = dict() outputs = S3DataGrabber.output_spec() @@ -36,4 +38,3 @@ def test_S3DataGrabber_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_S3DataSink.py b/nipype/interfaces/tests/test_auto_S3DataSink.py index add9ddb5c2..9ef342defb 100644 --- a/nipype/interfaces/tests/test_auto_S3DataSink.py +++ b/nipype/interfaces/tests/test_auto_S3DataSink.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import S3DataSink + def test_S3DataSink_inputs(): input_map = dict(_outputs=dict(usedefault=True, ), @@ -32,6 +33,7 @@ def test_S3DataSink_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_S3DataSink_outputs(): output_map = dict(out_file=dict(), ) @@ -40,4 +42,3 @@ def test_S3DataSink_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_SEMLikeCommandLine.py b/nipype/interfaces/tests/test_auto_SEMLikeCommandLine.py index 5c42df7910..8afc2cdec2 100644 --- a/nipype/interfaces/tests/test_auto_SEMLikeCommandLine.py +++ b/nipype/interfaces/tests/test_auto_SEMLikeCommandLine.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..base import SEMLikeCommandLine + def test_SEMLikeCommandLine_inputs(): input_map = dict(args=dict(argstr='%s', ), diff --git a/nipype/interfaces/tests/test_auto_SQLiteSink.py b/nipype/interfaces/tests/test_auto_SQLiteSink.py index 5017acac00..f215e3e424 100644 --- a/nipype/interfaces/tests/test_auto_SQLiteSink.py +++ b/nipype/interfaces/tests/test_auto_SQLiteSink.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import SQLiteSink + def test_SQLiteSink_inputs(): input_map = dict(database_file=dict(mandatory=True, ), diff --git a/nipype/interfaces/tests/test_auto_SSHDataGrabber.py b/nipype/interfaces/tests/test_auto_SSHDataGrabber.py index 0ab83b764b..cbec846af1 100644 --- a/nipype/interfaces/tests/test_auto_SSHDataGrabber.py +++ b/nipype/interfaces/tests/test_auto_SSHDataGrabber.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import SSHDataGrabber + def test_SSHDataGrabber_inputs(): input_map = dict(base_directory=dict(mandatory=True, ), @@ -32,6 +33,7 @@ def test_SSHDataGrabber_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SSHDataGrabber_outputs(): output_map = dict() outputs = SSHDataGrabber.output_spec() @@ -39,4 +41,3 @@ def test_SSHDataGrabber_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_Select.py b/nipype/interfaces/tests/test_auto_Select.py index 6509148edf..26d629da4c 100644 --- a/nipype/interfaces/tests/test_auto_Select.py +++ b/nipype/interfaces/tests/test_auto_Select.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..utility import Select + def test_Select_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -17,6 +18,7 @@ def test_Select_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Select_outputs(): output_map = dict(out=dict(), ) @@ -25,4 +27,3 @@ def test_Select_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_SelectFiles.py b/nipype/interfaces/tests/test_auto_SelectFiles.py index b30a53d899..49cb40dcf6 100644 --- a/nipype/interfaces/tests/test_auto_SelectFiles.py +++ b/nipype/interfaces/tests/test_auto_SelectFiles.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import SelectFiles + def test_SelectFiles_inputs(): input_map = dict(base_directory=dict(), force_lists=dict(usedefault=True, @@ -20,6 +21,7 @@ def test_SelectFiles_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SelectFiles_outputs(): output_map = dict() outputs = SelectFiles.output_spec() @@ -27,4 +29,3 @@ def test_SelectFiles_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_SlicerCommandLine.py b/nipype/interfaces/tests/test_auto_SlicerCommandLine.py index f2a8e4b717..131c8f851c 100644 --- a/nipype/interfaces/tests/test_auto_SlicerCommandLine.py +++ b/nipype/interfaces/tests/test_auto_SlicerCommandLine.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..dynamic_slicer import SlicerCommandLine + def test_SlicerCommandLine_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -21,6 +22,7 @@ def test_SlicerCommandLine_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SlicerCommandLine_outputs(): output_map = dict() outputs = SlicerCommandLine.output_spec() @@ -28,4 +30,3 @@ def test_SlicerCommandLine_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_Split.py b/nipype/interfaces/tests/test_auto_Split.py index 596d6a51da..03da66dec6 100644 --- a/nipype/interfaces/tests/test_auto_Split.py +++ b/nipype/interfaces/tests/test_auto_Split.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..utility import Split + def test_Split_inputs(): input_map = dict(ignore_exception=dict(nohash=True, usedefault=True, @@ -19,6 +20,7 @@ def test_Split_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Split_outputs(): output_map = dict() outputs = Split.output_spec() @@ -26,4 +28,3 @@ def test_Split_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_SplitNifti.py b/nipype/interfaces/tests/test_auto_SplitNifti.py index bcd389a0ca..1a0ad4aa15 100644 --- a/nipype/interfaces/tests/test_auto_SplitNifti.py +++ b/nipype/interfaces/tests/test_auto_SplitNifti.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..dcmstack import SplitNifti + def test_SplitNifti_inputs(): input_map = dict(in_file=dict(mandatory=True, ), @@ -17,6 +18,7 @@ def test_SplitNifti_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_SplitNifti_outputs(): output_map = dict(out_list=dict(), ) @@ -25,4 +27,3 @@ def test_SplitNifti_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/tests/test_auto_StdOutCommandLine.py b/nipype/interfaces/tests/test_auto_StdOutCommandLine.py index e7a3089553..6c91c5de40 100644 --- a/nipype/interfaces/tests/test_auto_StdOutCommandLine.py +++ b/nipype/interfaces/tests/test_auto_StdOutCommandLine.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..base import StdOutCommandLine + def test_StdOutCommandLine_inputs(): input_map = dict(args=dict(argstr='%s', ), diff --git a/nipype/interfaces/tests/test_auto_XNATSink.py b/nipype/interfaces/tests/test_auto_XNATSink.py index ee35b059ca..dd681af29f 100644 --- a/nipype/interfaces/tests/test_auto_XNATSink.py +++ b/nipype/interfaces/tests/test_auto_XNATSink.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import XNATSink + def test_XNATSink_inputs(): input_map = dict(_outputs=dict(usedefault=True, ), diff --git a/nipype/interfaces/tests/test_auto_XNATSource.py b/nipype/interfaces/tests/test_auto_XNATSource.py index 1744ce7eb5..297c050a22 100644 --- a/nipype/interfaces/tests/test_auto_XNATSource.py +++ b/nipype/interfaces/tests/test_auto_XNATSource.py @@ -2,6 +2,7 @@ from ...testing import assert_equal from ..io import XNATSource + def test_XNATSource_inputs(): input_map = dict(cache_dir=dict(), config=dict(mandatory=True, @@ -27,6 +28,7 @@ def test_XNATSource_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_XNATSource_outputs(): output_map = dict() outputs = XNATSource.output_spec() @@ -34,4 +36,3 @@ def test_XNATSource_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/vista/tests/test_auto_Vnifti2Image.py b/nipype/interfaces/vista/tests/test_auto_Vnifti2Image.py index 4996b2b8de..16abe83a0e 100644 --- a/nipype/interfaces/vista/tests/test_auto_Vnifti2Image.py +++ b/nipype/interfaces/vista/tests/test_auto_Vnifti2Image.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..vista import Vnifti2Image + def test_Vnifti2Image_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -34,6 +35,7 @@ def test_Vnifti2Image_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_Vnifti2Image_outputs(): output_map = dict(out_file=dict(), ) @@ -42,4 +44,3 @@ def test_Vnifti2Image_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/interfaces/vista/tests/test_auto_VtoMat.py b/nipype/interfaces/vista/tests/test_auto_VtoMat.py index 713dd9dbc6..77c814dab5 100644 --- a/nipype/interfaces/vista/tests/test_auto_VtoMat.py +++ b/nipype/interfaces/vista/tests/test_auto_VtoMat.py @@ -2,6 +2,7 @@ from ....testing import assert_equal from ..vista import VtoMat + def test_VtoMat_inputs(): input_map = dict(args=dict(argstr='%s', ), @@ -31,6 +32,7 @@ def test_VtoMat_inputs(): for metakey, value in list(metadata.items()): yield assert_equal, getattr(inputs.traits()[key], metakey), value + def test_VtoMat_outputs(): output_map = dict(out_file=dict(), ) @@ -39,4 +41,3 @@ def test_VtoMat_outputs(): for key, metadata in list(output_map.items()): for metakey, value in list(metadata.items()): yield assert_equal, getattr(outputs.traits()[key], metakey), value - diff --git a/nipype/utils/nipype_cmd.py b/nipype/utils/nipype_cmd.py index d32b33da7d..93ddcd16be 100644 --- a/nipype/utils/nipype_cmd.py +++ b/nipype/utils/nipype_cmd.py @@ -27,7 +27,7 @@ def add_options(parser=None, module=None, function=None): for name, spec in sorted(interface.inputs.traits(transient=None).items()): desc = "\n".join(interface._get_trait_desc(inputs, name, spec))[len(name)+2:] args = {} - + if spec.is_trait_type(traits.Bool): args["action"] = 'store_true'