Skip to content

Commit f046d55

Browse files
committed
Update logan function to correct output (bp)
1 parent 2c56ae7 commit f046d55

File tree

1 file changed

+4
-3
lines changed

1 file changed

+4
-3
lines changed

nipype/interfaces/freesurfer/petsurfer.py

Lines changed: 4 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -379,14 +379,15 @@ class GTMPVCInputSpec(FSTraitedSpec):
379379
)
380380

381381
class GTMPVCOutputSpec(TraitedSpec):
382-
382+
383383
pvc_dir = Directory(exists=True, desc="output directory")
384384
ref_file = File(exists=True, desc="Reference TAC in .dat")
385385
hb_nifti = File(exists=True, desc="High-binding TAC in nifti")
386386
hb_dat = File(exists=True, desc="High-binding TAC in .dat")
387387
nopvc_file = File(exists=True, desc="TACs for all regions with no PVC")
388388
gtm_file = File(exists=True, desc="TACs for all regions with GTM PVC")
389389
gtm_stats = File(exists=True, desc="Statistics for the GTM PVC")
390+
390391

391392
class GTMPVC(FSCommand):
392393
"""create an anatomical segmentation for the geometric transfer matrix (GTM).
@@ -538,7 +539,7 @@ class LoganRefInputSpec(GLMFitInputSpec):
538539
)
539540

540541
class LoganRefOutputSpec(GLMFitInputSpec):
541-
vd = File(desc="BP estimates")
542+
bp = File(desc="BP estimates")
542543

543544
class LoganRef(GLMFit):
544545
_cmd = "mri_glmfit"
@@ -553,5 +554,5 @@ def _list_outputs(self):
553554
ext = '.nii'
554555
else:
555556
ext = '.mgh'
556-
outputs['vd'] = os.join(self.inputs.glm_dir, 'vd' + ext)
557+
outputs['bp'] = os.join(self.inputs.glm_dir, 'bp' + ext)
557558
return outputs

0 commit comments

Comments
 (0)