From 08b5f0f8c4970e70b16354a550336d424900c2ca Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Thu, 19 Sep 2019 16:29:29 -0400 Subject: [PATCH 1/6] DOC: Update changelog for upcoming 2.5.1 release --- Changelog | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/Changelog b/Changelog index 832e7d0843..fb004c93e3 100644 --- a/Changelog +++ b/Changelog @@ -25,6 +25,33 @@ Eric Larson (EL), Demian Wassermann, and Stephan Gerhard. References like "pr/298" refer to github pull request numbers. +2.5.1 (Monday 23 September 2019) +================================ + +Enhancements +------------ +* Ignore endianness in ``nib-diff`` if values match (pr/799) (YOH, reviewed + by CM) + +Bug fixes +--------- +* Correctly handle Philips DICOMs w/ derived volume (pr/795) (Mathias + Goncalves, reviewed by CM) +* Raise CSA tag limit to 1000, parametrize for future relaxing (pr/798, + backported to 2.5.x in pr/800) (Henry Braun, reviewed by CM, MB) +* Coerce data types to match NIfTI intent codes when writing GIFTI data + arrays (pr/806) (CM, reported by Tom Holroyd) + +Maintenance +----------- +* Require h5py 2.10 for Windows + Python < 3.6 to resolve unexpected dtypes + in Minc2 data (pr/804) (CM, reviewed by YOH) + +API changes and deprecations +---------------------------- +* Deprecate ``nicom.dicomwrappers.Wrapper.get_affine()`` in favor of ``affine`` + property; final removal in nibabel 4.0 (pr/796) (YOH, reviewed by CM) + 2.5.0 (Sunday 4 August 2019) ============================ From d8941fc3b1f6057f67aecd6355844f7bda182e94 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sun, 15 Sep 2019 10:26:37 -0400 Subject: [PATCH 2/6] MAINT: Version 2.5.1 --- nibabel/info.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/nibabel/info.py b/nibabel/info.py index 12d0dc9d7e..c45e36c8e6 100644 --- a/nibabel/info.py +++ b/nibabel/info.py @@ -19,8 +19,8 @@ _version_major = 2 _version_minor = 5 _version_micro = 1 -_version_extra = 'dev' -# _version_extra = '' +# _version_extra = 'dev' +_version_extra = '' # Format expected by setup.py and doc/source/conf.py: string of form "X.Y.Z" __version__ = "%s.%s.%s%s" % (_version_major, From bcb4dcc618db5dc0f632e04d71034dc4a281ddc9 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sun, 15 Sep 2019 10:28:05 -0400 Subject: [PATCH 3/6] MAINT: Update zenodo.json --- .zenodo.json | 13 ++++++++----- 1 file changed, 8 insertions(+), 5 deletions(-) diff --git a/.zenodo.json b/.zenodo.json index 16555380a4..a5ce5075aa 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -87,6 +87,11 @@ { "name": "Moloney, Brendan" }, + { + "affiliation": "MIT", + "name": "Goncalves, Mathias", + "orcid": "0000-0002-7252-7771" + }, { "name": "Burns, Christopher" }, @@ -130,11 +135,6 @@ { "name": "Baker, Eric M." }, - { - "affiliation": "MIT", - "name": "Goncalves, Mathias", - "orcid": "0000-0002-7252-7771" - }, { "name": "Hayashi, Soichi" }, @@ -244,6 +244,9 @@ "name": "P\u00e9rez-Garc\u00eda, Fernando", "orcid": "0000-0001-9090-3024" }, + { + "name": "Braun, Henry" + }, { "name": "Solovey, Igor" }, From 28d460ea61560d0f20b3014e1fe03e5e688d80f6 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sun, 15 Sep 2019 10:36:20 -0400 Subject: [PATCH 4/6] DOC: Add Henry Braun to contributor list --- doc/source/index.rst | 1 + 1 file changed, 1 insertion(+) diff --git a/doc/source/index.rst b/doc/source/index.rst index ce1db32b86..09f09d4883 100644 --- a/doc/source/index.rst +++ b/doc/source/index.rst @@ -98,6 +98,7 @@ contributed code and discussion (in rough order of appearance): * Matt Cieslak * Egor Pafilov * Jath Palasubramaniam +* Henry Braun License reprise =============== From 1ab44e7298282fcd718007321439725034100131 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sun, 15 Sep 2019 10:55:59 -0400 Subject: [PATCH 5/6] MAINT: Update setup.cfg nose version to match installation instructions --- setup.cfg | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/setup.cfg b/setup.cfg index 69bd84afe7..08e8727424 100644 --- a/setup.cfg +++ b/setup.cfg @@ -34,7 +34,8 @@ install_requires = numpy >=1.8 six >=1.3 bz2file ; python_version < "3.0" -tests_require = nose +tests_require = + nose >=0.11 test_suite = nose.collector zip_safe = False packages = find: @@ -46,7 +47,7 @@ dicom = doc = sphinx >=0.3 test = - nose >=0.10.1 + nose >=0.11 all = %(dicom)s %(doc)s From 248b946b5d956b4b80f84006b26630620084d1cc Mon Sep 17 00:00:00 2001 From: Henry Braun Date: Thu, 19 Sep 2019 16:23:03 -0500 Subject: [PATCH 6/6] add @hbraunDSP affiliation and ORCID --- .zenodo.json | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.zenodo.json b/.zenodo.json index a5ce5075aa..9b4621464f 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -245,7 +245,9 @@ "orcid": "0000-0001-9090-3024" }, { - "name": "Braun, Henry" + "affiliation": "Center for Magnetic Resonance Research, University of Minnesota", + "name": "Braun, Henry", + "orcid": "0000-0001-7003-9822" }, { "name": "Solovey, Igor"