Pluto Notebook doesn't work on datascience-notebook

[jlphillipsphd]

What docker image(s) are you using?

datascience-notebook

Host OS system

Debian 12 and Ubuntu 22.04

Host architecture

x86_64

What Docker command are you running?

docker run -it --rm -p 8888:8888 --user root -e GRANT_SUDO=yes -v /home/jphillips:/home/jovyan/work jupyter/datascience-notebook:2023-09-04

How to Reproduce the problem?

1. Visit the provided JLab link - JupyterLab opens (working)
2. Visit the Pluto Notebook link on the Launcher (tab opens)
3. Page for pluto server seems to be broken/not working
4. Click on "Create a new notebook" and I just get a 500 error
   

Command output

docker run -it --rm -p 8888:8888 --user root -e GRANT_SUDO=yes -v /home/jphillips:/home/jovyan/work jupyter/datascience-notebook:2023-09-04

Expected behavior

Expected Pluto Notebook server to open since it's a part of this stack...

Actual behavior

Non-working Pluto Server.

Anything else?

Just wanting to try Pluto Notebook - don't feel like I can use datascience-notebook as a starting point for my stacks because it has a prominent non-functioning component.

Latest Docker version

• I've updated my Docker version to the latest available, and the issue still persists

[jlphillipsphd]

I've attached the traceback from the JLab server
traceback-pluto.txt

For me, this also happens when deploying within JupyterHub...

[mathbunnyru]

I only have my M2 (aarch64) Mac currently, your command seems to work fine for me.

Could you please try to install the official version of the Docker Engine?
https://docs.docker.com/engine/install/debian/
I've seen some weird things happening with distribution of Docker packages, provided by fistro maintainers.

[jlphillipsphd]

That's what I use...

jphillips@asyncritus:~$ cat /etc/apt/sources.list.d/docker.list
deb [arch=amd64 signed-by=/usr/share/keyrings/docker-archive-keyring.gpg] https://download.docker.com/linux/ubuntu       jammy stable
jphillips@asyncritus:~$ docker version
Client: Docker Engine - Community
 Version:           24.0.6
 API version:       1.43
 Go version:        go1.20.7
 Git commit:        ed223bc
 Built:             Mon Sep  4 12:31:44 2023
 OS/Arch:           linux/amd64
 Context:           default

Server: Docker Engine - Community
 Engine:
  Version:          24.0.6
  API version:      1.43 (minimum version 1.12)
  Go version:       go1.20.7
  Git commit:       1a79695
  Built:            Mon Sep  4 12:31:44 2023
  OS/Arch:          linux/amd64
  Experimental:     false
 containerd:
  Version:          1.6.22
  GitCommit:        8165feabfdfe38c65b599c4993d227328c231fca
 runc:
  Version:          1.1.8
  GitCommit:        v1.1.8-0-g82f18fe
 docker-init:
  Version:          0.19.0
  GitCommit:        de40ad0

[jlphillipsphd]

Sorry, just hit the wrong button...

[jlphillipsphd]

I tried clearing out the cache and history on Chrome, but still have the issue... however, I sometimes see this when I request to "Create a new notebook" on the (still broken, missing images/says loading...) Pluto page:

This comes up in the logs:

[ Info: Loading...                                                                                                                                                                                     [25/1827]
Invalid instruction at 0x7f1cf0ea249b: 0x62, 0xd2, 0xfd, 0x08, 0x29, 0x87, 0x08, 0x00, 0x00, 0x00, 0xc4, 0xe3, 0x79, 0x30, 0xc8                                                                                 
                                                                                                        
[514] signal (4.2): Illegal instruction                                                                 

Then also this about libc:

main at julia (unknown line)
unknown function (ip: 0x7f1d2d73fd8f)
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8)

[mathbunnyru]

Could you please also try private Chrome tab with all extensions disabled?

I don't know what might help if it's a libc issue - maybe upgrading your OS, or trying images which were built with previous Julia versions.

[jlphillipsphd]

OK, so image tag 2023-09-04 appears to be the broken image for me... I had luck with both ubuntu-22.04 and 2023-09-11

I don't know why the discrepancy in these versions, but I guess it was just a temporary issue. Here are those image hashes if that helps in the future in some way...

jphillips@asyncritus:~$ docker pull jupyter/datascience-notebook:ubuntu-22.04
ubuntu-22.04: Pulling from jupyter/datascience-notebook
Digest: sha256:133c934126ec70c4277aeee5ebc0be3f5a08cefd952ad89d193a9ee109857b4d
Status: Image is up to date for jupyter/datascience-notebook:ubuntu-22.04
docker.io/jupyter/datascience-notebook:ubuntu-22.04
jphillips@asyncritus:~$ docker pull jupyter/datascience-notebook:2023-09-04
2023-09-04: Pulling from jupyter/datascience-notebook
Digest: sha256:cce1245214ea3ca3978f1f95731331daa2ef57b0b56130b2cd93c4bfb4cd5340
Status: Image is up to date for jupyter/datascience-notebook:2023-09-04
docker.io/jupyter/datascience-notebook:2023-09-04
jphillips@asyncritus:~$ docker pull jupyter/datascience-notebook:2023-09-11
2023-09-11: Pulling from jupyter/datascience-notebook
Digest: sha256:133c934126ec70c4277aeee5ebc0be3f5a08cefd952ad89d193a9ee109857b4d
Status: Image is up to date for jupyter/datascience-notebook:2023-09-11
docker.io/jupyter/datascience-notebook:2023-09-11

Thank you for the help @mathbunnyru !

[mathbunnyru]

Thank you @jlphillipsphd!

[andreasskeidsvoll]

I unfortunately get the same bug on new versions of the image (e.g. 2023-10-23), and downgrading to 2023-09-04 seems to solve the problem.

[mathbunnyru]

@andreasskeidsvoll could you please create a new issue (please use our issue template, so we have more information).