diff --git a/sql/core/src/main/scala/org/apache/spark/sql/Dataset.scala b/sql/core/src/main/scala/org/apache/spark/sql/Dataset.scala
index c29fd968fc195..db88b83dc4e69 100644
--- a/sql/core/src/main/scala/org/apache/spark/sql/Dataset.scala
+++ b/sql/core/src/main/scala/org/apache/spark/sql/Dataset.scala
@@ -227,6 +227,11 @@ class Dataset[T] private[sql](
       dsIds.add(id)
       plan.setTagValue(Dataset.DATASET_ID_TAG, dsIds)
     }
+    // A plan might get its PLAN_ID_TAG via connect or belong to multiple dataframes so only assign
+    // an id to a plan if it doesn't have any
+    if (plan.getTagValue(LogicalPlan.PLAN_ID_TAG).isEmpty) {
+      plan.setTagValue(LogicalPlan.PLAN_ID_TAG, id)
+    }
     plan
   }
 
@@ -1472,8 +1477,13 @@ class Dataset[T] private[sql](
    * @group untypedrel
    * @since 3.5.0
    */
-  def metadataColumn(colName: String): Column =
-    Column(queryExecution.analyzed.getMetadataAttributeByName(colName))
+  def metadataColumn(colName: String): Column = {
+    val a = queryExecution.analyzed.getMetadataAttributeByName(colName)
+    a.setTagValue(LogicalPlan.PLAN_ID_TAG,
+      logicalPlan.getTagValue(LogicalPlan.PLAN_ID_TAG).get)
+    a.setTagValue(LogicalPlan.IS_METADATA_COL, ())
+    Column(a)
+  }
 
   // Attach the dataset id and column position to the column reference, so that we can detect
   // ambiguous self-join correctly. See the rule `DetectAmbiguousSelfJoin`.
@@ -1482,14 +1492,20 @@ class Dataset[T] private[sql](
   // `DetectAmbiguousSelfJoin` will remove it.
   private def addDataFrameIdToCol(expr: NamedExpression): NamedExpression = {
     val newExpr = expr transform {
-      case a: AttributeReference
-        if sparkSession.conf.get(SQLConf.FAIL_AMBIGUOUS_SELF_JOIN_ENABLED) =>
-        val metadata = new MetadataBuilder()
-          .withMetadata(a.metadata)
-          .putLong(Dataset.DATASET_ID_KEY, id)
-          .putLong(Dataset.COL_POS_KEY, logicalPlan.output.indexWhere(a.semanticEquals))
-          .build()
-        a.withMetadata(metadata)
+      case a: AttributeReference =>
+        val newA = if (sparkSession.conf.get(SQLConf.FAIL_AMBIGUOUS_SELF_JOIN_ENABLED)) {
+          val metadata = new MetadataBuilder()
+            .withMetadata(a.metadata)
+            .putLong(Dataset.DATASET_ID_KEY, id)
+            .putLong(Dataset.COL_POS_KEY, logicalPlan.output.indexWhere(a.semanticEquals))
+            .build()
+          a.withMetadata(metadata)
+        } else {
+          a
+        }
+        newA.setTagValue(LogicalPlan.PLAN_ID_TAG,
+          logicalPlan.getTagValue(LogicalPlan.PLAN_ID_TAG).get)
+        newA
     }
     newExpr.asInstanceOf[NamedExpression]
   }
@@ -1573,7 +1589,15 @@ class Dataset[T] private[sql](
 
       case other => other
     }
-    Project(untypedCols.map(_.named), logicalPlan)
+    val metadataOutputSet = AttributeSet(logicalPlan.metadataOutput)
+    val namedCols = untypedCols.map(_.named).map(_.transform {
+      case ar: AttributeReference
+          if !logicalPlan.outputSet.contains(ar) && !metadataOutputSet.contains(ar) =>
+        val ua = UnresolvedAttribute(Seq(ar.name))
+        ua.copyTagsFrom(ar)
+        ua
+    }.asInstanceOf[NamedExpression])
+    Project(namedCols, logicalPlan)
   }
 
   /**
diff --git a/sql/core/src/test/scala/org/apache/spark/sql/DataFrameSuite.scala b/sql/core/src/test/scala/org/apache/spark/sql/DataFrameSuite.scala
index 6b34a6412cc0f..df220c96f7d82 100644
--- a/sql/core/src/test/scala/org/apache/spark/sql/DataFrameSuite.scala
+++ b/sql/core/src/test/scala/org/apache/spark/sql/DataFrameSuite.scala
@@ -2575,6 +2575,55 @@ class DataFrameSuite extends QueryTest
     val expected = getQueryResult(false).map(_.getTimestamp(0).toString).sorted
     assert(actual == expected)
   }
+
+  test("SPARK-47217: Fix deduplicated expression resolution") {
+    Seq(true, false).foreach(fail =>
+      withSQLConf(SQLConf.FAIL_AMBIGUOUS_SELF_JOIN_ENABLED.key -> fail.toString) {
+        val df = Seq((1, 2)).toDF("a", "b")
+        val df2 = df.select(df("a").as("aa"), df("b"))
+        val df3 = df2.join(df, df2("b") === df("b")).select(df2("aa"), df("a"))
+        checkAnswer(df3, Row(1, 1) :: Nil)
+      }
+    )
+  }
+
+  test("SPARK-47217: Fix deduplicated expression resolution 2") {
+    Seq(true, false).foreach(fail =>
+      withSQLConf(SQLConf.FAIL_AMBIGUOUS_SELF_JOIN_ENABLED.key -> fail.toString) {
+        val schema = StructType.fromDDL("a int, b int")
+        val rows = Seq(Row(1, 2))
+        val rdd = sparkContext.parallelize(rows)
+        val df = spark.createDataFrame(rdd, schema)
+        val df2 = df.select(df("a").as("aa"), df("b"))
+        val df3 = df2.join(df, df2("b") === df("b")).select(df2("aa"), df("a"))
+        checkAnswer(df3, Row(1, 1) :: Nil)
+      }
+    )
+  }
+
+  test("SPARK-47217: Fix deduplicated expression resolution 3") {
+    Seq(true, false).foreach(fail =>
+      withSQLConf(SQLConf.FAIL_AMBIGUOUS_SELF_JOIN_ENABLED.key -> fail.toString) {
+        val df = Seq((1, 2)).toDF("a", "b")
+        val df2 = Seq((1, 2)).toDF("c", "d")
+        val df3 = df.join(df2, df2("d") === df("b")).select(df("a").as("aa"), df2("c").as("cc"))
+        val df4 = df3.join(df, df("a") === df3("cc")).select(df3("aa"), df("a"))
+        checkAnswer(df4, Row(1, 1) :: Nil)
+      }
+    )
+  }
+
+  test("SPARK-47217: Fix deduplicated expression resolution 4") {
+    Seq(true, false).foreach(fail =>
+      withSQLConf(SQLConf.FAIL_AMBIGUOUS_SELF_JOIN_ENABLED.key -> fail.toString) {
+        val df = Seq((1, 2)).toDF("a", "b")
+        val df2 = df.select(df("a").as("aa"), df("b").as("bb"))
+        val df3 = df.select(df("a"), df("b"))
+        val df4 = df2.join(df3, df2("bb") === df("b")).select(df2("aa"), df("a"))
+        checkAnswer(df4, Row(1, 1) :: Nil)
+      }
+    )
+  }
 }
 
 case class GroupByKey(a: Int, b: Int)