diff --git a/vista_2d/vista_2d_tutorial_monai.ipynb b/vista_2d/vista_2d_tutorial_monai.ipynb index fe2db6ac8..80821bfdc 100644 --- a/vista_2d/vista_2d_tutorial_monai.ipynb +++ b/vista_2d/vista_2d_tutorial_monai.ipynb @@ -53,18 +53,13 @@ "metadata": {}, "outputs": [], "source": [ - "!python -c \"import monai\" || pip install -q monai\n", - "!python -c \"import fire\" || pip install -q fire\n", - "!python -c \"import tifffile\" || pip install -q tifffile\n", - "!python -c \"import imagecodecs\" || pip install -q imagecodecs\n", - "!python -c \"import PIL\" || pip install -q pillow\n", + "!python -c \"import monai\" || pip install -q \"monai-weekly[fire, tifffile, imagecodecs, pillow, tqdm]\"\n", "!python -c \"import fastremap\" || pip install -q fastremap\n", "!python -c \"import cellpose\" || pip install -q cellpose\n", "!python -c \"import natsort\" || pip install -q natsort\n", "!python -c \"import roifile\" || pip install -q roifile\n", "!python -c \"import ipykernel\" || pip install -q ipykernel\n", "!python -c \"import cv2\" || pip install -q opencv-python-headless\n", - "!python -c \"import tqdm\" || pip install -q tqdm\n", "!python -c \"import numba\" || pip install -q numba\n", "!python -c \"import segment_anything\" || pip install -q git+https://github.com/facebookresearch/segment-anything.git\n", "%matplotlib inline" diff --git a/vista_3d/vista3d_spleen_finetune.ipynb b/vista_3d/vista3d_spleen_finetune.ipynb index 7a4fbe13b..031cbfb6d 100644 --- a/vista_3d/vista3d_spleen_finetune.ipynb +++ b/vista_3d/vista3d_spleen_finetune.ipynb @@ -32,7 +32,7 @@ "\n", "The Spleen dataset can be downloaded from http://medicaldecathlon.com/.\n", "\n", - "![spleen](../../figures/spleen0.png)\n", + "![spleen](../figures/spleen0.png)\n", "\n", "Target: Spleen \n", "Modality: CT \n",